PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G35420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 190aa    MW: 19830.1 Da    PI: 4.628
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G35420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000274466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C + F++   L  H+++H
  OMERI02G35420.1 44 YNCTFCRRGFPTAQALGGHMNVH 66
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-64170No hitNo description
Gene3DG3DSA:3.30.160.603.6E-44270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-64468IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4714471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSQETSKDEV IGGRSPSGDG DKAEEELREA GGDDDDEAGT RQPYNCTFCR RGFPTAQALG  60
GHMNVHRKDR VGRATPSSSA AARRSDSYDT LVGLFRPPAI GGSEDAAAST AAGGGGSLRS  120
RTAEPAPQEL RLFGRDDGAG RREEGGGRDR RDRYGCCSKD DDGDGNGGHD HGEEELDLEL  180
RLGGSGSAGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624572.13e-56zinc finger protein 11
TrEMBLA0A0E0CN861e-129A0A0E0CN86_9ORYZ; Uncharacterized protein
STRINGOMERI02G22390.11e-130(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-12C2H2 family protein