PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G33790.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 406aa MW: 40361.4 Da PI: 5.7751

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G33790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.4e-12	219	264	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OMERI02G33790.1 219 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 264 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-17	212	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	216	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.06E-13	218	268	No hit	No description
Pfam	PF00010	2.6E-9	219	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MQPNARQMHG GGGGGGQDDF FDQMLSTLPA VWSELGSGKP AWDLTAGVGG GASDDHSAAA 60 FDDSALLASR LRQHQIDGGG DKPIMLQLSD LHRHHGLAAG DDSGGAAGFL PLSLFADRSQ 120 DDIDAAFKSP NGAGGDHALY NGFGAAGMHG AAAMQPPPFG QGGSMPAQSF GGGAAASSGG 180 GGSASAAAAA AAGASSGGGA AAPPRQRQRA RRGQATDPHS IAERLRRERI AERMKALQEL 240 VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGASA VAPLVANMSS ESNGNGNATS 300 SSGNGDATNG SSNGDNNGGG TLRVTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI 360 SSATSSSLLP RTGGGAGGSL HEGGNGTSPP LVNGAATGGD DAGGKQ

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MQPNARQMHG GGGGGGQDDF FDQMLSTLPA VWSELGSGKP AWDLTAGVGG GASDDHSAAA  60
FDDSALLASR LRQHQIDGGG DKPIMLQLSD LHRHHGLAAG DDSGGAAGFL PLSLFADRSQ  120
DDIDAAFKSP NGAGGDHALY NGFGAAGMHG AAAMQPPPFG QGGSMPAQSF GGGAAASSGG  180
GGSASAAAAA AAGASSGGGA AAPPRQRQRA RRGQATDPHS IAERLRRERI AERMKALQEL  240
VPNANKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGGASA VAPLVANMSS ESNGNGNATS  300
SSGNGDATNG SSNGDNNGGG TLRVTEQQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI  360
SSATSSSLLP RTGGGAGGSL HEGGNGTSPP LVNGAATGGD DAGGKQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	228	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627343.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	2e-78	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0E0CSJ6	0.0	A0A0E0CSJ6_9ORYZ; Uncharacterized protein
STRING	OMERI02G33060.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	3e-41	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]