PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G32400.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 609aa    MW: 63355.6 Da    PI: 4.8018
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G32400.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30341400159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  OMERI02G32400.2 341 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 400
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31326402IPR003657WRKY domain
SuperFamilySSF1182903.27E-27334402IPR003657WRKY domain
PROSITE profilePS5081128.529336402IPR003657WRKY domain
SMARTSM007741.4E-37341401IPR003657WRKY domain
PfamPF031061.1E-26342400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MSSKKKRAAA IDLSVEAERR RPEEGGDGGD REASDGAAAA AEEDGDVKQK QREGPKEETG  60
GEEEKVVEVV ADQGEDGSNE EIKYRTQQGD MMEEDKQPAA AANVDDDGGD SDGAGASAEE  120
KHMVTEATGG EGDDGGDSRT AMAQDELSEM QEEMERMKEE NRMLRRVVDK TVRDYYELQM  180
KLAAYQQQPA AADEPKETEV FLSLGATTAA GGSGGGGFPE AKSKEQAAWR RRSVGSDDSD  240
DGKEDLGLSL SLGTSSSYDD DQKAVEARPH DVDGAAAAAM IVGSRPAPRG YALLESSKVQ  300
GGAAPAAGEL SAAGGITSQS VNPANRKTRV SVRVRCQGPT MNDGCQWRKY GQKVAKGNPC  360
PRAYYRCTVA PGCPVRKQVQ RCLEDMSILV TTYEGTHNHP LPVGATAMAS TTSAAATFML  420
LSSTTSSSSV SDAAAAAAGV STAPSSSYLS PYLLNSASPL LMPGATVGGG GGMQHLNLFG  480
NSPSSSSLLA PQAPGSSKYP WSPNHPPLAG AGGNKRPFWS AGGDGDKPAP AALAENVGAV  540
MSDPNKFSAA INNFMGKDGE SSSGKSSTFA WTRSMDRTAT PASVPAPARP RREPVHGPGP  600
RRGEQAAKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22328404176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0040800.0AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623937.20.0probable WRKY transcription factor 47
TrEMBLA0A0E0CS140.0A0A0E0CS14_9ORYZ; Uncharacterized protein
STRINGOMERI02G31590.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-50WRKY DNA-binding protein 9