PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G32310.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 287aa MW: 30658.8 Da PI: 10.5716

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G32310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	43.4	9.4e-14	94	182	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +q+lw + De++lL G f+a+ g p d+ a+++ +++s+s ++ + + K++rLK K+ + + + +h++ + +l+ ++ OMERI02G32310.1 94 VQKLWGDADEVALLAGAAAFRARAGHVPRLpDMGALFDSIRGSLSPHIDQAKVYYKLKRLKGKYLHAAPG-------ASAGPHERRVRDLCASV 180 79**********************77766********************************99888.......67889999999999999 PP DUF573 96 Wg 97 Wg OMERI02G32310.1 181 WG 182 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.0E-14	95	182	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MPSKRPSQSA MDAGAAPASP SPPRSSKKRS SRPKPRAGDA ARHPAPNPSP PPAAAAPASS 60 RSRERERKRR QRGAFADPAA VTAPAAGGQH GGAVQKLWGD ADEVALLAGA AAFRARAGHV 120 PRLPDMGALF DSIRGSLSPH IDQAKVYYKL KRLKGKYLHA APGASAGPHE RRVRDLCASV 180 WGADLEPLAE GDDERAAADQ PRTVPDAAAM LPVLTEMLDE YWKTDGRALS SVSLAKGLSL 240 LRTEEARFIE GKWRGQLDSE IQTQMRRHDL AKEVYALLMD AIKALGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	70	ERKRRQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK289234	0.0	AK289234.1 Oryza sativa Japonica Group cDNA, clone: J100073J19, full insert sequence.
GenBank	AP004080	0.0	AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBank	AP004125	0.0	AP004125.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1767_D02.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626514.1	1e-142	STOREKEEPER protein
TrEMBL	A0A0E0CS00	0.0	A0A0E0CS00_9ORYZ; Uncharacterized protein
STRING	OMERI02G31490.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2682	27	63