PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G29850.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 428aa MW: 46930.3 Da PI: 9.7062

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G29850.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	190	207	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR +iN++ OMERI02G29850.2 190 RSKHSATEQRRRTKINDR 207 889*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.2E-4	189	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEMRRSL RPLELAKQRS 60 RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRSSAF 120 AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGKTPYEA TRAEGRSSAS 180 SADQGPSTPR SKHSATEQRR RTKINDRQAS RGLKYFVNSC HTLIRRETKL LSFRRFLQER 240 VQKYEEADPE RNHEDSKSIP WNVSQVQGED LSPSTQDMNN EQYGPKHISA AQPALFNTQS 300 VTSTTTSSSH MATGTPQNLE KNSTPSNQPP WLSMSTMRQE SESGNKMPNK HEKQTLHDEN 360 HSISSAYSQG LFNRLTEALK KSGLDPSQAN IAVEINLAKR ARDNTSDNSK INEDEEPIQI 420 TKRRCNKS

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEMRRSL RPLELAKQRS  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRSSAF  120
AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGKTPYEA TRAEGRSSAS  180
SADQGPSTPR SKHSATEQRR RTKINDRQAS RGLKYFVNSC HTLIRRETKL LSFRRFLQER  240
VQKYEEADPE RNHEDSKSIP WNVSQVQGED LSPSTQDMNN EQYGPKHISA AQPALFNTQS  300
VTSTTTSSSH MATGTPQNLE KNSTPSNQPP WLSMSTMRQE SESGNKMPNK HEKQTLHDEN  360
HSISSAYSQG LFNRLTEALK KSGLDPSQAN IAVEINLAKR ARDNTSDNSK INEDEEPIQI  420
TKRRCNKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068228	0.0	AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627558.1	0.0	transcription factor BIM2
Refseq	XP_015627559.1	0.0	transcription factor BIM2
Refseq	XP_015627560.1	0.0	transcription factor BIM2
TrEMBL	A0A0E0CQX9	0.0	A0A0E0CQX9_9ORYZ; Uncharacterized protein
STRING	ONIVA02G34070.4	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.1	8e-20	bHLH family protein