PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G28440.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 438aa    MW: 45911 Da    PI: 7.1536
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G28440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.21.1e-29167220358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++rY+eClkNhAa++G+h++DGCgEfm+s+g+   aaal CaACgCHR+FHRre++
  OMERI02G28440.1 167 TWRYRECLKNHAARMGAHVLDGCGEFMSSPGDG--AAALACAACGCHRSFHRREPA 220
                      689**************************8887..99****************975 PP
2Homeobox17.85.8e-06327383153
                      TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +r Rt+ft+eq e++ e+ +    + ++p+a++     +++g++ r+ kvW +N + 
  OMERI02G28440.1 327 KRFRTKFTAEQKERMREFAHrvgwRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKH 383
                      789***********987655888779****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.7E-26168219IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-9169196IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.6E-26169218IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.485170218IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-30319386IPR009057Homeodomain-like
SuperFamilySSF466891.15E-19319384IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-26326382IPR006455Homeodomain, ZF-HD class
CDDcd000860.00645327380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEDD DEEEDEEEQG HHQYTTAAAA AAAAQQLHPQ VLGSSASSPS  60
SLMDSAAFSR PLLPPNLSLV SPSAAAAAAA PPGGSYLHAA HHHGQGRRVE APGGESQHQL  120
QRHHEPARNG VLGGVAGAHA ASTLALVGGG GGGGPTGGEG AAGEAPTWRY RECLKNHAAR  180
MGAHVLDGCG EFMSSPGDGA AALACAACGC HRSFHRREPA VVAPASLSLL PASASAAAGV  240
VSLSPSATPT GANSSRLMPL LLAPPHMQKR PPVLPVSPAS APAALAESSS EELRPPPPPP  300
PLPSSHPHAH AAAVVASASA PPGPSKKRFR TKFTAEQKER MREFAHRVGW RIHKPDAAAV  360
DAFCAQVGVS RRVLKVWMHN NKHLAKTPPS PTSQPPPPPP PLHHDPSPPP PPHHHHHHHH  420
HHHPPQHHQQ QQQQQHDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-233253831674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4804960.0AF480496.1 Oryza sativa clone BAC 49D11, complete sequence.
GenBankAP0053230.0AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05.
GenBankAP0058440.0AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626824.11e-159zinc-finger homeodomain protein 7
SwissprotQ8S3Q91e-160ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A0E0CQD90.0A0A0E0CQD9_9ORYZ; Uncharacterized protein
STRINGOMERI02G27730.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-22homeobox protein 22