PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G27980.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 634aa    MW: 66701 Da    PI: 6.5925
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G27980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30366424259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  OMERI02G27980.1 366 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 424
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109360426IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-31360426IPR003657WRKY domain
SuperFamilySSF1182904.71E-26363426IPR003657WRKY domain
SMARTSM007741.4E-37365425IPR003657WRKY domain
PfamPF031061.5E-25367424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MIHPLISSPS SPSFFSPFLS FFLSALTKQH CHFSLSLSLL ATILSASIGS AATGWVYPTL  60
YHHQYHCTTT LASIRERERE RERERERERE RXXXXXXXXX ERERERERER ERERERGGGG  120
GGGGQIIMCD YFLQRMEGEQ AAGDLADIVL RAGGAAAAVA GGGIPSTEWQ LPPAEEEEEE  180
PGLFPLPPSS SDGSGMSGTD AFGDPFAGLP DPFGGDYPSS SAGAAAAADF FDAVVAKAGF  240
IDVGVLGGGG GGGCDGGGVD GGGGGSSLLG MSKPILPRAA MQMPSVSPRA IRPYPVMAGD  300
TVKLGAPMAG GPCAFDGAAA AGLHMSSSSP RAGGGIKRRK NQARKVVCIP APAAAGGRTS  360
GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE  420
HNHPWPTQRN ALAGSTRSHH AKNSCSNSSS SGASSASKNN SSHSGYHHHH HQKPLVKAEP  480
NDQSAAAAAT TAATVPVKEE AAMVGTSSEA LPKTTQKSME DAAAAASATA AAVEHSDLMQ  540
QMFSQSYRPM IPETAAGGHH DDFFADLAEL ESDPMSLIFS KEYMATNYKP AGDPAGKEMN  600
AIDKDLDPAY MLDWSTTVVT RAGGSSFMQG EGGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24340427280Disease resistance protein RRS1
5w3x_D1e-24340427280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105115RERERERERER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731000.0AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624748.10.0probable WRKY transcription factor 14
TrEMBLA0A0E0CQ690.0A0A0E0CQ69_9ORYZ; Uncharacterized protein
STRINGOMERI02G27240.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-63WRKY DNA-binding protein 35