PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G27110.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 310aa    MW: 33916.3 Da    PI: 9.7849
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G27110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-133781147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  OMERI02G27110.1 37 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-173187IPR009057Homeodomain-like
PROSITE profilePS5129415.4083286IPR017930Myb domain
TIGRFAMsTIGR015571.3E-183584IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-63587IPR009057Homeodomain-like
SMARTSM007175.3E-113684IPR001005SANT/Myb domain
PfamPF002492.5E-113781IPR001005SANT/Myb domain
CDDcd001671.77E-83982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVSANQPPPD AAAAAAGSAG EDASKKVRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK  60
KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK ASKNEPGYII  120
KADSSSMLRN SGMNATVSSW THNSIPPIVA SSMVKEDLGA GAMAPNNFCS SSTEGPARAW  180
QPGETNDQIN QVPSLRHFAQ VYSFLGSVFD PSTSGHLQKL KEMNPIDVET ALLLMRNLSI  240
NLTSPDFEDQ RKLLSSYSTP SDGIELGSTR SSVLADRPLS APFIMCKGAT VYSRLAQSVR  300
SESLRIPTGI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880590.0AK288059.1 Oryza sativa Japonica Group cDNA, clone: J075153L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627665.10.0protein REVEILLE 6 isoform X2
SwissprotQ8H0W38e-99RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0E0CPT50.0A0A0E0CPT5_9ORYZ; Uncharacterized protein
STRINGOMERI02G26310.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.16e-84MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]