PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G25900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 29445.3 Da PI: 5.0452 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.5e-19 | 103 | 153 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g OMERI02G25900.1 103 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 153 57*****887.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-13 | 103 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.73E-29 | 103 | 161 | No hit | No description |
SMART | SM00380 | 4.2E-37 | 104 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.118 | 104 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 104 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 104 | 161 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.7E-11 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEAAAIHAPT TTTSSDSGSC VTNGTREKRE ISKPKQLKRK RSTSPAPPPG CGGGQGQEAA 60 VETDADAGAA GRGGGAGEEE SSSCGGAGAG EGERKRGDAG RHPSYRGVRR RSWGKWVSEI 120 REPRKKSRIW LGTFPTAEMA ARAHDVAALA IKGRAAHLNF PSLAHTLPRP ASTSPSDIQA 180 AAALAAAAAA TDQCESSSSA VAAATATDAE ATESTSSAAA SPCAATSSVE ENALFDLPDL 240 LLDLSDGLWC SPVWTTAPAD QYDDGDDAAA PLLWAEQCWM DAAAGARAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-19 | 96 | 161 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837654 | 0.0 | CT837654.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054J01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626317.1 | 1e-108 | ethylene-responsive transcription factor TINY | ||||
Swissprot | Q8LBQ7 | 1e-49 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0E0CPB0 | 0.0 | A0A0E0CPB0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G25030.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-42 | ERF family protein |
Publications ? help Back to Top | |||
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