PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G18820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 486aa    MW: 53467.7 Da    PI: 4.4877
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G18820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35681602103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++++el+ +isw + gnsfvv+d++ fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+ll+
  OMERI02G18820.1  68 FLSKTYDLVSEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHLLK 152
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      ki r++s+
  OMERI02G18820.1 153 KIVRRRSS 160
                      ****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.1E-5664157IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3364157IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-3864157IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3168157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-176891IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-17106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340107131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-17119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDHNTDPPPT TMDAAAAALL LEPKLEGYDD GGGGEPLQPA PFVSPLDQLM RPPRPLEALL  60
QGPQLPPFLS KTYDLVSEPE LDGVISWGHA GNSFVVWDPS AFARDVLPHH FKHNNFSSFV  120
RQLNTYGFRK VHADRWEFAH EDFLRHSKHL LKKIVRRRSS PTQQSGQPGS SGESGLDPEL  180
NTLRREKSAL LQEVTRLKQE HLQTIEHMST LNQRLESAED RQKQMVSFLA KLLQNPTFLR  240
QLKMQQKEID STRVKRKFLK HIPHGNIDSG ESSSQHTGES NLDFSLTSLD LPATHGDISD  300
LQNFLLEDGD LNLAMLPDNI GLDGIEAPDD IGALVQGFDT QEELELGSGV ELLEMPPASG  360
PHGQDPTIGI SKGKNVLSPG LDAASSEADC LGSFSDNMGM LSDSMLQTAG KLMDADDDER  420
IWGVNASSAL QSSCSGTSQQ AYGSLVSDPY LMEMANKPEK FWELDFQALD DGDLQLDKCV  480
IDDPAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-256016011123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019340.0AK101934.1 Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623061.10.0heat stress transcription factor A-3
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A0E0CLE40.0A0A0E0CLE4_9ORYZ; Uncharacterized protein
STRINGOMERI02G18050.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-65heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]