PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G17330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 497aa    MW: 55153.3 Da    PI: 5.0286
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G17330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.84.5e-30221352101
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT................XTTS CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks................keki 78 
                      Fl k+ye+++d++++ ++sws ++  sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+Y  + +++++++                   +++ 
  OMERI02G17330.1  22 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYI-SLLENDSST--MfclttkklvlqgfrkiDPER 112
                      9********************66679**********************************5.444444433..2357777888877665449** PP

                      EEEEESXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  79 weFkhksFkkgkkellekikrkk 101
                      weF++++F kg+k+ll++i+r+k
  OMERI02G17330.1 113 WEFANEYFIKGQKHLLKNIHRRK 135
                      *********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.35E-2818134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-3318134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-4818134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-132245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2622134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-136173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-137486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEVAAGARGG GAGGGGGGPA PFLLKTYEMV DDPSTDAVVS WSDASDASFV VWNHPEFAAR  60
LLPAYFKHSN FSSFIRQLNT YISLLENDSS TMFCLTTKKL VLQGFRKIDP ERWEFANEYF  120
IKGQKHLLKN IHRRKPIHSH SHPPGALPDN ERAIFEDEIE RLSREKSNLQ ADLWKSKQQQ  180
SGTMNQIEDL ERRVLGMEQR QTKMIAFLQQ ASKNPQFVNK LVKMAEASSI FTDAFNKKRR  240
LPGLDYSIEN TETTSFYDDH SSTSKQETGN LLNQHFSDKL RLGLCPAMTE SNIITLSTQS  300
SNEDNGSPHG KHPECDMMGR ECLPLVPQMM ELSDTGTSIC PSKSSCFAPP ISDEGLLTCH  360
LSLTLASCSM DVDKSQGLNA NGTTIDNPTE AATATMEKDD TIDRSFDDNQ KKSADSRTAD  420
ATTPRADARV ASEAPAAPAA VVNDKFWEQF LTERPGCSET EEASSGLRTD TSREQMENRQ  480
AYDHSRNDGE DVEQLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-18913417129Heat shock factor protein 1
5d5v_B4e-18913417129Heat shock factor protein 1
5d5v_D4e-18913417129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049990.0AP004999.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0040H05.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622576.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A0E0CKT60.0A0A0E0CKT6_9ORYZ; Uncharacterized protein
STRINGONIVA02G18700.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-102HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]