PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G11000.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 287aa MW: 30871.5 Da PI: 6.9717

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G11000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.6	2e-33	16	107	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F+ k+y++++d++++ +i w +++nsfvv d+ f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h sF +g+++ll+ OMERI02G11000.1 16 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLLR 100 9**************************************************************999.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i r++s OMERI02G11000.1 101 RIVRRSS 107 **987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	8.71E-33	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.4E-37	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.6E-52	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.6E-29	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-17	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-17	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-17	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MTTTAAAEAG GGVAPFVAKT YRMVDDPATD GVIAWGRDSN SFVVADPFAF SQTLLPAHFK 60 HSNFSSFVRQ LNTYGFRKVD PDRWEFAHVS FLRGQTHLLR RIVRRSSGGG GGAKRKEEAG 120 GCGGGEAAPG DVDEESAVVA MEVARLRREQ REIEGRVAAM WRRVQETERR PKQMLAFLVK 180 VVGDPQVLRR LVNRDNSAAA AAAAVDRATR GDHQVKRPRL LLDSSSPTTH GDHHLAAAAD 240 AFVPDDEVDF TGLYTGGDGF GNVVDAAAAA GVDYPPAYAF PVVDSGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-23	13	105	26	129	Heat shock factor protein 1
5d5v_B	4e-23	13	105	26	129	Heat shock factor protein 1
5d5v_D	4e-23	13	105	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106488	0.0	AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623571.1	1e-150	heat stress transcription factor C-2a
Swissprot	Q6EUG4	1e-151	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A0E0CID0	0.0	A0A0E0CID0_9ORYZ; Uncharacterized protein
STRING	OMERI02G10900.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	9e-61	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]