PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OMERI02G02130.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 184aa MW: 20815.7 Da PI: 6.2287

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G02130.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.6	4.3e-38	35	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp +er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el OMERI02G02130.1 35 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMTERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 128 6********************************************************************************************* PP DUF260 95 allkee 100 a+++++ OMERI02G02130.1 129 ARTQAH 134 *99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.264	34	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-37	35	132	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MVYMVYKVER FGRIIMQDPE EDDDDQHQQH PAARRCAACR YLRRRCADDC VLAPFFPASR 60 PHRYACVHRV FGASNVARLL QSLPMTERGN AANTMAMEAY WRVQDPVYGC TGIINRLQEE 120 IRAVQCELAR TQAHLAIVVA SSQQPPPPPP PPPLLPPPPQ QQQEEQSPPP LLDPADEFLN 180 LDGH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-29	36	135	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-29	36	135	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107078	1e-137	AK107078.1 Oryza sativa Japonica Group cDNA clone:002-121-F06, full insert sequence.
GenBank	AP004708	1e-137	AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12.
GenBank	AP004761	1e-137	AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03.
GenBank	AP014964	1e-137	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660281.1	1e-65	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59467	5e-38	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	4e-38	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A0E0CEK8	1e-131	A0A0E0CEK8_9ORYZ; Uncharacterized protein
STRING	OGLUM08G21760.1	1e-79	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	1e-31	LOB domain-containing protein 23