PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI01G42290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 400aa MW: 43859.6 Da PI: 4.9222 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.4e-31 | 163 | 219 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++++tYeg H h OMERI01G42290.1 163 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLIVTYEGLHLH 219 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.164 | 157 | 222 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.1E-29 | 160 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 161 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-36 | 162 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-25 | 163 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 400 aa Download sequence Send to blast |
MEGAMQESRE YWRDGGDVVG EELLREILDE TAAAAAAAAV HSNSNSNSNS NSNSNSKEAE 60 DEREYFAAAA ADEVGAPCGR RRRESMVNKL ISTVYSGPTI SDIESALSFT AAADHQLLAD 120 GHNFAASSCS PVVFSPEKTL SKTMENKYTL KMKSCGNNGG LADDGYKWRK YGQKSIKNSP 180 NPRSYYRCTN PRCNAKKQVE RAVDEPDTLI VTYEGLHLHY TYSHFLHSTS SSSTQQQQQQ 240 LQPQMMTNCK KKPKLHLHPL QHDDPPPPPP PPEMTTMMIM QSFSIQQQQH DDQLLQPAAD 300 HLMVQAPPDD CYNIDGSSLM MSLDDDEQAA AAGGLLEDVV PLLVRRPPPN NYYFSPATTC 360 TSDNEYGSSA SASPSSSVSV SSWTTPMSPC IDMAILSNIF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-19 | 161 | 219 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-19 | 161 | 219 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK110625 | 0.0 | AK110625.1 Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert sequence. | |||
GenBank | AY341842 | 0.0 | AY341842.1 Oryza sativa (japonica cultivar-group) WRKY1 mRNA, complete cds. | |||
GenBank | AY870605 | 0.0 | AY870605.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641374.1 | 0.0 | probable WRKY transcription factor 49 | ||||
TrEMBL | A0A0E0CDJ8 | 0.0 | A0A0E0CDJ8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G41840.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7525 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43290.1 | 3e-45 | WRKY DNA-binding protein 49 |