PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G40030.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 261aa MW: 28844.2 Da PI: 6.5998 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 152.2 | 1e-47 | 33 | 115 | 2 | 84 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ OMERI01G40030.2 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMR 115 89*******************************************************************************97 PP | |||||||
2 | NF-YB | 143.8 | 4e-45 | 167 | 258 | 3 | 94 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 qd++lPianv+rimk lP +akisk aket+qec++efisfvt+eas++c+re+rkt+ngdd+++a+ tlG+++y+++++ yl++yre e OMERI01G40030.2 167 GQDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVNGDDVCHAMRTLGLDHYADAMHRYLQRYREGE 258 69***************************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.2E-44 | 27 | 115 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.37E-33 | 35 | 116 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-26 | 38 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.5E-15 | 66 | 84 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 69 | 85 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.5E-15 | 85 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.20.10 | 4.0E-41 | 164 | 258 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.64E-32 | 168 | 257 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.7E-24 | 172 | 235 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PROSITE pattern | PS00685 | 0 | 202 | 218 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.5E-15 | 237 | 255 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MADHHGDHHA DGHRRQQQLQ GEAADQAAAE IIKEQDRLLP IANVGRIMKQ ILPPNAKISK 60 EAKETMQECV SEFISFVTGE ASDKCHKEKR KTVNGDDVCW AFGALGFDDY VDPMRSRDLN 120 FSGFNQLGRL QPMQGLPRAS SSSTSASRDR DGGDGDGGGG GVTMTNGQDN LLPIANVGRI 180 MKDGLPPQAK ISKRAKETIQ ECATEFISFV TGEASERCRR ERRKTVNGDD VCHAMRTLGL 240 DHYADAMHRY LQRYREGEEL A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-37 | 32 | 256 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-37 | 32 | 256 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003246 | 0.0 | AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12. | |||
GenBank | AP003266 | 0.0 | AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878241.1 | 8e-82 | nuclear transcription factor Y subunit B-4 | ||||
Swissprot | O82248 | 6e-48 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A0E0CCP2 | 0.0 | A0A0E0CCP2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G39560.1 | 1e-162 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 4e-50 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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