PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38840.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 450aa    MW: 49206.1 Da    PI: 10.1233
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-1445141399
                      EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      kvl+ps+  k   +++  + a++      gg  ++  t ++ ++ g+ W+v + +r ++gr +l++GW eF+ a+gL +g fvv+++ g  ++ 
  OMERI01G38840.1  45 KVLVPSSFRK---MSICDELAAQLgvgvgGGGATRAATARVASPLGKAWDVGV-VRDGDGRAFLGRGWAEFAAAHGLGVGWFVVLRHGG-GGGV 133
                      5555554444...679999998889999966678899****************.688888899***********************876.5555 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      + v +f++
  OMERI01G38840.1 134 FAVEAFDT 141
                      68888775 PP
2B351.32.1e-161772561496
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + +++p kf++++  g++ +s + ++ ++ g+sW+v+l  +k +++++l++GW +F + +g+  gD+v+F+++g+  f  +++v
  OMERI01G38840.1 177 DKMRIPDKFIRDYiPGENLNSNMAIILSPLGKSWRVEL--DKDRSGVFLGGGWLQFLSFHGISRGDVVIFRYEGNLVF--KISV 256
                      5699**********555567889999************..*******************************9987666..4444 PP
3B378.19.3e-25344438185
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...........-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...........rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvF 82 
                      ++k++++++vl++++l+l ++f+e++g+ +e+s+tl++ ++++           rsWev+   r+++++ y+l++GW++F+++ng+++gD++vF
  OMERI01G38840.1 344 WIKKEINEYVLERCILSLARTFCESIGLAEESSITLMMINTTStqgdqggnrssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVCVF 435
                      789*************************************99999****************..9999999************************ PP

                      EE- CS
               B3  83 kld 85 
                      ++ 
  OMERI01G38840.1 436 TVL 438
                      954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.01743142IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-1344144IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1245144IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1145140IPR003340B3 DNA binding domain
CDDcd100171.37E-1284140No hitNo description
PROSITE profilePS5086310.06687142IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-19160260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-20161260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.62164260IPR003340B3 DNA binding domain
CDDcd100173.88E-18165257No hitNo description
SMARTSM010198.9E-15167260IPR003340B3 DNA binding domain
PfamPF023624.4E-14177252IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-15340449IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-18341449IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.026344450IPR003340B3 DNA binding domain
PfamPF023625.3E-14344439IPR003340B3 DNA binding domain
SMARTSM010197.4E-4345447IPR003340B3 DNA binding domain
CDDcd100178.12E-9349436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MITPDYSQHH RPAEKAPRVA VSPAAAMGSR GDHGGGGAAR ATQLKVLVPS SFRKMSICDE  60
LAAQLGVGVG GGGATRAATA RVASPLGKAW DVGVVRDGDG RAFLGRGWAE FAAAHGLGVG  120
WFVVLRHGGG GGVFAVEAFD TTCCLREFGA PPAEAGRATD TSRKPQFLMV LLPGIMDKMR  180
IPDKFIRDYI PGENLNSNMA IILSPLGKSW RVELDKDRSG VFLGGGWLQF LSFHGISRGD  240
VVIFRYEGNL VFKISVFGVN GRQKDLKAKG ISIHQGTGEQ QEAPSFSRRK CNNKKKSRFG  300
EDDENQQEMP CSRKGSGNKG RTSDRKTKRM KKTRSVYEIG PRSWIKKEIN EYVLERCILS  360
LARTFCESIG LAEESSITLM MINTTSTQGD QGGNRSSRSW EVTGRRYKDA CYLLGAGWRR  420
FCEDNGVRSG DVCVFTVLDT TLWRVHIDRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-141CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-141CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881011.10.0putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0E0CC650.0A0A0E0CC65_9ORYZ; Uncharacterized protein
STRINGOMERI01G38290.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-17B3 family protein