PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38790.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 443aa    MW: 48182.6 Da    PI: 8.6646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-1085110227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C +++rtG C++G +C+F+H++
  OMERI01G38790.1  85 GEPDCTYYLRTGLCRFGMSCRFNHPQ 110
                      6899********************97 PP
2zf-CCCH38.91.4e-12130155227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tGtCk+G++CkF+H++
  OMERI01G38790.1 130 GQPECQYYLKTGTCKFGPTCKFHHPR 155
                      5799********************96 PP
3zf-CCCH37.15.2e-12177201327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tG+CkyG++CkF+H++
  OMERI01G38790.1 177 EKECAYYLKTGQCKYGNTCKFHHPE 201
                      679********************96 PP
4zf-CCCH39.31.1e-12338363227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG Ck+G+ CkF+H++
  OMERI01G38790.1 338 DQPECQYYMKTGDCKFGAVCKFHHPR 363
                      689*********************96 PP
5zf-CCCH41.81.8e-13383408126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++elC+f++r+G+Ck+G++CkF H+
  OMERI01G38790.1 383 PGEELCKFYSRYGICKFGANCKFDHP 408
                      689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.5E-583110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.35283111IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-885110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-588111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-489110IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986128156IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6131157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5134156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868174202IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5174201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6175201IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9177201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5180200IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023336364IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9338363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5339363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4342362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413382410IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7382409IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10384408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6384409IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5386407IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPPPPPPPSQ LPATAAATDD PSHDPAALYG  60
EGMWQQMTMS GSGAMQPGPY PERSGEPDCT YYLRTGLCRF GMSCRFNHPQ DRNLAIASAR  120
MKGEYPERMG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGRVQLNTLG YPLRPSEKEC  180
AYYLKTGQCK YGNTCKFHHP ELFNAMASSR GSPIYPSVHS SATAGPPSYT GTMASWAFPR  240
GSFIPSPRWQ NPSNYAPMIV PQGLVQVPSW NSYTGQMIPV SSSESRLQSP GAQQTYGTSQ  300
QVDASAGNQG MLSPYRSSSY PVPQYALQRE NVFPERPDQP ECQYYMKTGD CKFGAVCKFH  360
HPRVRSMPTP DCVLSPVGLP LRPGEELCKF YSRYGICKFG ANCKFDHPTM APPMGVYAYG  420
SASTNVPMVR RLLQSPSASA YTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0E0CC560.0A0A0E0CC56_9ORYZ; Uncharacterized protein
STRINGOMERI01G38240.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]