PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38640.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 483aa    MW: 50231 Da    PI: 6.6256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09289336455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  OMERI01G38640.1 289 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 336
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.29E-10283340No hitNo description
SuperFamilySSF474591.44E-16283354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6289336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDAA AAAAGGHLDP ALSSMVSSPA SNSTGALHGI  60
SPQPHYGGGT PLSSPPKLNL SMMGQFHHYA APPQVGGGGG GGGGLPILEN LMPMGHLDQF  120
LADPGFAERA ARLSGFDARG GGGGGGYGGA GPAQFSLPDA GAAGASKEME LGNTRDESSV  180
SDPAPGGAEI PPKGASDGNA RKRKASGKGK GKDSPMSTSA AKEDSSGKRC KSTEESNAAA  240
EENSGKGKAA QSNSENGGKK QGKDSSSKPP EPPKDYIHVR ARRGEATDSH SLAERVRREK  300
ISQRMKLLQD LVPGCNKVVG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PQLDFNNLPN  360
LLAKDMHQSC SPLQSSHFPL ETSGAPLPYI NQPQQGNPLG CGLTNGMDNQ GSMHPLDPAF  420
CRPMGSHHPF LNGVSDAASQ VGAFWQDDLQ SVVQMDMGQS QEIATSSNSY NGSLQTVHMK  480
MEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0transcription factor bHLH77 isoform X2
TrEMBLA0A0E0CC360.0A0A0E0CC36_9ORYZ; Uncharacterized protein
STRINGOMERI01G38110.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-60bHLH family protein