PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G38510.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 471aa    MW: 50147.3 Da    PI: 4.159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G38510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.9e-161152344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     i n   r +t+ kR++g++KKA EL +LCd+ vav+ ++++g
  OMERI01G38510.1 11 IANPQTRATTYKKRKAGLIKKAGELATLCDIPVAVVCAGPDG 52
                     789999**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.778152IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-19160IPR002100Transcription factor, MADS-box
CDDcd002667.22E-27281No hitNo description
SuperFamilySSF554554.84E-21384IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MARRKTSIAL IANPQTRATT YKKRKAGLIK KAGELATLCD IPVAVVCAGP DGGAPTVWVS  60
PEGGDAIERY RALPAEKRAM HTHVAYLQEE LDKERAKLAR LRQKGRPGEL DPPDAVLDGM  120
SQDELQQLLA SIDATLLATA RRREALGLLA GADDDADSGG RRDADVAGTN SVGVHGYQHQ  180
DPFHPYNAGL TLMQPGYNNA QYMGGHGAVD MSGYQLQMQM MPGNGSNNHG QLAWGGFQPC  240
NATFVQPVYG NLQCWDNNVV DGNGEPCDAI VPSAGDPYMD IAGNDVYGNQ MQPAPAANGG  300
WHDPGTWGND GGEPCNAIVP SSGDPYMDIG VYGNQMQPAP APAANGGWHN PAGTWGNDGE  360
TCKAIVPSAG HPYIDIECDL DGNYIDTTVF DYQTTSTSDN FMDAPVQFIA TGSDESIVTN  420
VAGCDETEFS IDDLLQCSDA SQHSSSLEEL HYLSDLADGF DFGCNFDVLL D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKTSIALIANPQTRATTYKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108280.0AK110828.1 Oryza sativa Japonica Group cDNA clone:002-171-H11, full insert sequence.
GenBankAP0034330.0AP003433.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0004D12.
GenBankAP0034360.0AP003436.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0470A12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640115.20.0uncharacterized protein LOC4324340
TrEMBLA0A0E0CC170.0A0A0E0CC17_9ORYZ; Uncharacterized protein
STRINGOMERI01G37980.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.15e-18AGAMOUS-like 86