PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G38380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 732aa MW: 76353.8 Da PI: 6.8769 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.4 | 2.6e-18 | 541 | 632 | 2 | 90 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++n+L+egDf+v++ ++ ++ OMERI01G38380.1 541 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiKS 631 79*************************999***********7777*******99777777777777.*******************9..44455 PP E CS B3 90 f 90 + OMERI01G38380.1 632 G 632 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.1E-27 | 534 | 641 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 3.65E-30 | 538 | 637 | No hit | No description |
SuperFamily | SSF101936 | 1.14E-21 | 539 | 636 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.671 | 540 | 644 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-15 | 540 | 641 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-15 | 541 | 632 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MDASAGSSAP HSHGNPGKQG GGGGGGGRGK APAAEIRGEA ARDDVFFADD TFPLLPDFPC 60 LSSPSSSTFS SSSSSNSSSA FTTAAGGGCG GEPSEPASAA DGFGELADID QLLDLASLSV 120 PWEAEQPLFP EDVGMMIEDA MSGQPHQADD CTGDTKAVVE AAGGGEDAGD ACMEGSDAPD 180 DLPAFFMEWL TSNREYISAD DLRSIRLRRS TIEAAAARLG GGRQGTMQLL KLILTWVQNH 240 HLQKKRPRTA IDDGAASSDP QLPSPGANPG YEFPSGGQEM GSAAADATSW MPYQAFTPPA 300 AYGGADAMYP GAAGPFPFQQ SCSTSSVVVN SQPFSPPTSA ASAGDMHASG GGNMAWPQQF 360 APFPVSSTSS YTMPSVVSPP FTAGFPGQYS GGHAMCSPRL AGVEPSSTKE ARKKRMARQR 420 RLSCLQQQRS QQLNLSQIHI SGHPQEPSPR AAHSAPVTPS SAGCRSWGIW PPAAQIIQNP 480 LSNKPNPPPA TSKQPKPSPE KPKPKPQAAA TAGAESLQRS TASEKRQAAT KTDKNLRFLL 540 QKVLKQSDVG SLGRIVLPKK EAEVHLPELK TRDGISIPME DIGTSQVWNM RYRFWPNNKS 600 RMYLLENTGD FVRSNELQEG DFIVIYSDIK SGKYQLIRGV KVRRAAQEQG NSPGAVGKHK 660 HGSPEKPGVS NTKAAGAEDG TGGDDSGDAA AAAAAAGKPD GGGCKGKSPH GVRRSRQEAA 720 AAASMSQMAV SI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 9e-38 | 536 | 649 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 9e-38 | 536 | 649 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105441 | 0.0 | AK105441.1 Oryza sativa Japonica Group cDNA clone:001-125-A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878207.1 | 0.0 | B3 domain-containing protein VP1 isoform X1 | ||||
Swissprot | P37398 | 0.0 | VIV_ORYSJ; B3 domain-containing protein VP1 | ||||
TrEMBL | A0A0E0CC00 | 0.0 | A0A0E0CC00_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G37850.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 9e-62 | B3 family protein |