PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G37660.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 448aa    MW: 46919.6 Da    PI: 8.8095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G37660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11382427655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + +++L  Av YIk+Lq
  OMERI01G37660.2 382 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVTYIKELQ 427
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-14379436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.02E-12380431No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14381437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9382427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MCTRIVGVAP STSPFPSQVG PITTTPRPPR PAEAKQKPKP KPQPAKPSPP PPPPPPTTNT  60
TTAASPEMNR MTAPHGGMPP PPMPAAGGLA RYGSAPGSLL ASIADSVIRG GGVDQLHHQH  120
QLLPPPPPPQ TQQQQQMVGR YFSAESSGLT SCESSCRTTT TTSTAAADVG RHPLERAYGG  180
SGEIHVDASS AAAGVPLFRH SSSPAGLLSR LMADPHGNGM AATRGMGGYS GGGGDAGAMA  240
HRRLSSQWSF SRQDLPQISE MGGLIPDIGE SIVTGGCNSS SDGTGHGAQS SSFLSSRNFS  300
MSSWDDTNSI MFSPPSSSKK ARVAAAAAAG NHGDDMVSSF SNIDSQQSSL EMAGMDDFLQ  360
LQPDSVACRA RAKRGCATHP RSIAERERRT RISKRLKKLQ DLVPNMDKQT NTSDMLDIAV  420
TYIKELQGQV EKLKHDQANC TCSGKHDC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1057130.0AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613853.10.0transcription factor bHLH128
TrEMBLA0A0E0CBN10.0A0A0E0CBN1_9ORYZ; Uncharacterized protein
STRINGOMERI01G37120.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-51bHLH family protein