PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G37050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 21363.9 Da PI: 7.0417 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 3 | 54 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ykGVr++k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa l+g+ OMERI01G37050.1 3 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDSPEKAARAFDAAFVTLRGH 54 59*****998.**********933...5********************98888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.71E-24 | 3 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.8E-27 | 4 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-18 | 4 | 66 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.799 | 4 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-28 | 4 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-10 | 4 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 5 | 16 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 27 | 43 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEKKYKGVRR RKWGKWVSEI RLPNSRDRIW LGSYDSPEKA ARAFDAAFVT LRGHGAAGAD 60 LNFPDSPPSC DARSCDPRQV QAAALSHANR AHVTPQQAAA ALMSPPSLSP PGLATGSEVV 120 APAVRADGSI DWRPVMAHPP PLYSPPGGWG GGHAYDFLQP PPPLPPLPSC DDDMVDVVDE 180 SSASLWSFDT RDSYFRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 4 | 64 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 11 | KGVRRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00601 | PBM | Transfer from AT1G74930 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004257 | 0.0 | AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624935.1 | 1e-111 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A0E0CBE4 | 1e-140 | A0A0E0CBE4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G36450.1 | 1e-123 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-34 | ERF family protein |