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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G36640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27361.8 Da PI: 9.2578 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92 | 2.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+EL +LCdae+a+i+fss+g+lye+s+ OMERI01G36640.1 9 KRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSN 59 79***********************************************95 PP | |||||||
2 | K-box | 77.6 | 3.1e-26 | 84 | 171 | 9 | 96 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + + +++ qqe+ak++ +i++Lq+ +Rhl+Ge++++++ keL++Le++Lek++++iRskK+ l ++ l+ k e+++++++ ++ OMERI01G36640.1 84 IDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKEADLQNENMFLRAKVAEAERAEHDQQQ 171 566889***********************************************************************99998876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.305 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-31 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.79E-44 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-19 | 86 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.446 | 89 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRGKIEIKR IENKTSRQVT FCKRRNGLLK KAYELAILCD AEIALIVFSS RGRLYEFSNV 60 NSTRSTIERY KKASASTSGS APVIDVNSHQ YFQQEAAKMR HQIQTLQNAN RHLIGESIGN 120 MTAKELKSLE NRLEKGISRI RSKKEADLQN ENMFLRAKVA EAERAEHDQQ QAAEDDEMAA 180 AAAAGGGSSS GTELEALPAT FDTREYYPPA PPVSMLAAAA AAAAQYSSDH HQTALHLGYF 240 KVDSGKGLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-19 | 1 | 68 | 1 | 68 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070958 | 0.0 | AK070958.1 Oryza sativa Japonica Group cDNA clone:J023065L09, full insert sequence. | |||
GenBank | AY551913 | 0.0 | AY551913.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS207 mRNA, complete cds. | |||
GenBank | FJ750944 | 0.0 | FJ750944.1 Oryza sativa clone KCS020C02 MADS-box transcription factor 21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621182.1 | 1e-168 | MADS-box transcription factor 21 | ||||
Swissprot | Q8RU31 | 1e-169 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | A0A0E0CB87 | 0.0 | A0A0E0CB87_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA01G0336500.1 | 1e-168 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 5e-78 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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