PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G35270.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 859aa MW: 92290.4 Da PI: 6.4747

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G35270.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00041	709	746	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq OMERI01G35270.4 709 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTIKHMLFLQ 746 77899**********6.....5999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.9E-35	7	195	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	5.39E-4	690	747	No hit	No description
PROSITE profile	PS50888	10.499	696	745	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-4	709	750	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AAGSQQLKLV WGDGHYERAA GAPSISGFEA 60 MDLLLKEKAA ALRSGTGRGG SGGGGEGHAA DGAAGHGHDR VDALVHKAMA QQVHVVGEGV 120 IGQAALTGLH RWIVHDIVDE CEEEDEVLLE MKGQFCAGIQ TIAVIPVLPR GVIQLGSTKM 180 VMEEAAFIDH VRSLFQQLGS STAVVPYGSF VQDSIMRTPF HKSLGVPTSS HSEDLAGGGN 240 TYNDDMINHQ FRHQKSPALT IQSFNPVQQF YAGPTFYRPV TIASGCDLFQ PDHGSTFTLN 300 SQSEDNRSTA LLKNSVSHSK TSNDVFSHTF NPINEPNVSI SGRRECVSIE QHGSCRNGEM 360 EITIGCTASS SCTGKTNILN KVDALLSQDC LVDCQTSNAT SVNRKFQTMS IVDNTKLQDG 420 SYAIPNAALV DSTRYSDCFQ SLLGTIQGSS SSNSNAIHVD TSHNAVHGKG NFCPLGDRNA 480 ANSSDLPELL ASPIPLELTG GNDLFDVLQL QQKPNGSNNS EANNRQSMPY GSEQAVKSLI 540 GCVDDDFTGL ITEADPDQLL DAIVSKIITG HKQNVDTSAS CSTTVAGFDK PLHSDCHLYT 600 TGPSSGPIFC NFASVAPVAI KTEGPAAGSR QSSSSIDKSA GCSQTQESYK SQIRLWVENN 660 HSVGSDSLST GQASDSLSTG QCKRSDEIGK SNRKRSRPGE SARPRPKDRQ MIQDRIKELR 720 EIVPNSAKCS IDALLEKTIK HMLFLQNVAK HADKLKESGE PKMLCKERGI FLEIADQIRG 780 LGLTILKGVM EVRKDKIWAR FAVEANKDVT RMEIFLSLVH LLEPSTGSSI LSAGVENTSL 840 PRDSFFPSSI PATGFSNCL

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AAGSQQLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG SGGGGEGHAA DGAAGHGHDR VDALVHKAMA QQVHVVGEGV  120
IGQAALTGLH RWIVHDIVDE CEEEDEVLLE MKGQFCAGIQ TIAVIPVLPR GVIQLGSTKM  180
VMEEAAFIDH VRSLFQQLGS STAVVPYGSF VQDSIMRTPF HKSLGVPTSS HSEDLAGGGN  240
TYNDDMINHQ FRHQKSPALT IQSFNPVQQF YAGPTFYRPV TIASGCDLFQ PDHGSTFTLN  300
SQSEDNRSTA LLKNSVSHSK TSNDVFSHTF NPINEPNVSI SGRRECVSIE QHGSCRNGEM  360
EITIGCTASS SCTGKTNILN KVDALLSQDC LVDCQTSNAT SVNRKFQTMS IVDNTKLQDG  420
SYAIPNAALV DSTRYSDCFQ SLLGTIQGSS SSNSNAIHVD TSHNAVHGKG NFCPLGDRNA  480
ANSSDLPELL ASPIPLELTG GNDLFDVLQL QQKPNGSNNS EANNRQSMPY GSEQAVKSLI  540
GCVDDDFTGL ITEADPDQLL DAIVSKIITG HKQNVDTSAS CSTTVAGFDK PLHSDCHLYT  600
TGPSSGPIFC NFASVAPVAI KTEGPAAGSR QSSSSIDKSA GCSQTQESYK SQIRLWVENN  660
HSVGSDSLST GQASDSLSTG QCKRSDEIGK SNRKRSRPGE SARPRPKDRQ MIQDRIKELR  720
EIVPNSAKCS IDALLEKTIK HMLFLQNVAK HADKLKESGE PKMLCKERGI FLEIADQIRG  780
LGLTILKGVM EVRKDKIWAR FAVEANKDVT RMEIFLSLVH LLEPSTGSSI LSAGVENTSL  840
PRDSFFPSSI PATGFSNCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068033	0.0	AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619837.1	0.0	transcription factor LHW isoform X4
TrEMBL	A0A0E0CAQ7	0.0	A0A0E0CAQ7_9ORYZ; Uncharacterized protein
STRING	OMERI01G34730.2	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	6e-43	conserved peptide upstream open reading frame 7