PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G35270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 687aa    MW: 74620.1 Da    PI: 6.73
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G35270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000325375741355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  OMERI01G35270.1 537 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTIKHMLFLQ 574
                      77899************6.....5999999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-357195IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.93E-4518575No hitNo description
PROSITE profilePS5088810.499524573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-4537581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-5537579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AAGSQQLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG SGGGGEGHAA DGAAGHGHDR VDALVHKAMA QQVHVVGEGV  120
IGQAALTGLH RWIVHDIVDE CEEEDEVLLE MKGQFCAGIQ TIAVIPVLPR GVIQLGSTKM  180
VMEEAAFIDH VRSLFQQLGS STAVVPYGSF VQDSIMRTPF HKSLGVPTSS HSEDLAGGGN  240
TYNDDMINHQ FRHQKSPALT IQSFNPVQQF YAGPTFYRPV TIASGCDLFQ PDHGSTFTLN  300
SQSEDNRSTA LLKNSVSHSK TSNDVFSHTF NPINEPNVSI SGRRECVSIE QHGSCRNGEM  360
EITIGCTASS SCTGKTNILN KVDALLSQDC LVDCQTSNAT SVNRKFQTMS IVDNTKLQDE  420
QAVKSLIGCV DDDFTGLITE ADPDQLLDAI VSKIITGHKQ NVDTSASCRC SQTQESYKSQ  480
IRLWVENNHS VGSDSLSTGQ ASDSLSTGQC KRSDEIGKSN RKRSRPGESA RPRPKDRQMI  540
QDRIKELREI VPNSAKCSID ALLEKTIKHM LFLQNVAKHA DKLKESGEPK MLCKERGIFL  600
EIADQIRGLG LTILKGVMEV RKDKIWARFA VEANKDVTRM EIFLSLVHLL EPSTGSSILS  660
AGVENTSLPR DSFFPSSIPA TGFSNCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
GenBankAK0996770.0AK099677.1 Oryza sativa Japonica Group cDNA clone:J013070F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
RefseqXP_015619848.10.0transcription factor LHW isoform X5
TrEMBLA0A0E0CAQ60.0A0A0E0CAQ6_9ORYZ; Uncharacterized protein
STRINGOMERI01G34730.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.14e-43conserved peptide upstream open reading frame 7