PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G34440.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 403aa    MW: 43882.8 Da    PI: 12.421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G34440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.7e-10136179247
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaai 47 
                       ++ Vr++   grWv+e+r+    g +  r ++g+f+t ee a+a+ 
  OMERI01G34440.1 136 VFRRVRRRGCAGRWVCEVRVL---GsRGDRLWVGTFDTTEETARARR 179
                      7899*************9994...4344**********999999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.76136201IPR001471AP2/ERF domain
SMARTSM003800.001136205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-13136187IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-8137188IPR016177DNA-binding domain
PfamPF008471.8E-5137177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MATAADHTDG GGARGRRVVR LATVAPGRRR ELAGLLVRSA MAARGCGHHH RDQLDDAAIK  60
SLPSLWPAGE AKEVRADALA LSPPPPTPTN CLRRRTRHGE EHRRHRAIDD LLRDGDAVVA  120
EAASGRTKFH ETRHPVFRRV RRRGCAGRWV CEVRVLGSRG DRLWVGTFDT TEETARARRR  180
HSRPVRGLRQ PQLRRLCLAA PHPARPCRLR TPATSCPMCS APPARLSPSS SAGGVPPLPL  240
PPPAMMHRPL LRRRPFCRAA RSHRRRCSPS AAALAYRRRR LSATAFARRR RLALPLPSPS  300
PVSPPLRRCR HIAGRPSNLL APATPSCSRV AAAMQVERPQ GAVERRSVRL QAAAGRHLLR  360
QPPTAAHRTP PAGRGGPPTP PAAGAPAAPA LLPCRLCSSR GEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280YRRRRL
2276290RRRRLSATAFARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY5020520.0AY502052.1 Oryza sativa (indica cultivar-group) CRT/DRE binding protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CAD70.0A0A0E0CAD7_9ORYZ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261