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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G33960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 183aa MW: 19518.4 Da PI: 6.6223 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 54 | 3.2e-17 | 20 | 56 | 22 | 58 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 sYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h OMERI01G33960.1 20 LSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 56 59**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 5.7E-8 | 9 | 58 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-12 | 19 | 56 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-13 | 19 | 58 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-15 | 20 | 57 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.709 | 21 | 59 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MFSDEQSFSE KPKFVGSRQL SYYKCTSSRC SAKKHVEKST DDPEMLIVTY EGSHHHGPQP 60 LHIALPPPPT SVVGFSAAAG AEPSSSSPAA VARKRKNDVR AAFSPTTSED DVDGAELHRR 120 GDARHAAPRR VATDRSCDDG GGGSTSASSS VARADAATAL SSDSPPTIWS CLDWPWSQET 180 LFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-111 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635485.1 | 1e-61 | WRKY transcription factor WRKY28 | ||||
TrEMBL | A0A0E0CA59 | 1e-130 | A0A0E0CA59_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G33470.1 | 1e-112 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-11 | WRKY DNA-binding protein 57 |