PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G32500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 361aa    MW: 37923.7 Da    PI: 5.6191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G32500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.78.5e-22146207258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnh 58 
                      dDgy+WrKYGqK++++++fpr+YYrC+++   +Cp++k+v++ + d  p + +++Y+ eH++
  OMERI01G32500.1 146 DDGYQWRKYGQKKINNTNFPRNYYRCSYHrerRCPAQKHVQQRDGDdvPALHVVVYTHEHTC 207
                      8***************************99999*******99887645678899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-24131207IPR003657WRKY domain
SuperFamilySSF1182904.58E-21140207IPR003657WRKY domain
SMARTSM007741.4E-30145209IPR003657WRKY domain
PROSITE profilePS5081118.119146208IPR003657WRKY domain
PfamPF031061.4E-22146207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MQAQSRLAAA ASGGGGGGSG ISGSGGISRL GGGAGEEHEA VVRELTRGHE LTARLRAEAL  60
RALRGQGQAE ATATFILGEV SRAFTVCLSI MANTSPSASP PRPDETPPPA DSAAVSVGAV  120
APPPPPRAGR EDNVPRKRLL TASPYDDGYQ WRKYGQKKIN NTNFPRNYYR CSYHRERRCP  180
AQKHVQQRDG DDVPALHVVV YTHEHTCLQG APAELPDAAT NGGAAPASPD YFPAGGETPS  240
SLRRFRAGGG GGGQPQFVDH RAAMEERERQ VLVSSLARVL QGRQCYDDDD DTDVASLGAV  300
HARAPAAAAP VAASSSSSGP VDAAGEELDV MDYDMTDALF WGPFGTDSNS YDGKPDVDTL  360
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-15146207968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877887.11e-171probable WRKY transcription factor 4
TrEMBLA0A0E0C9J70.0A0A0E0C9J7_9ORYZ; Uncharacterized protein
STRINGOMERI01G31910.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-17WRKY family protein