PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G32490.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 384aa    MW: 41423.5 Da    PI: 6.6257
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G32490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.81.9e-22123184259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK++++s++ r Y++Ct++   +C +kk+v+ r+a +p ++ +tY +eH+++
  OMERI01G32490.1 123 KDGYQWRKYGQKNIQDSNYLRLYFKCTFSherRCAAKKQVQqRDAGEPPMFLVTYLNEHTCQ 184
                      7**************************988899*******7356789*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-24111187IPR003657WRKY domain
SuperFamilySSF1182903.27E-22117186IPR003657WRKY domain
SMARTSM007741.1E-33122185IPR003657WRKY domain
PfamPF031066.3E-23123184IPR003657WRKY domain
PROSITE profilePS5081116.662124186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAFGQDTIEQ LYRELAGGRH LSAKLQALLE GPLDSRGQKE AVDVSRELGR VFMVSLYMLK  60
PCSNSSRRPG EVTRTAPETR TDDSICLHTP ARVKRVRSEE VLVKNGREEV VTRTEIITPS  120
PYKDGYQWRK YGQKNIQDSN YLRLYFKCTF SHERRCAAKK QVQQRDAGEP PMFLVTYLNE  180
HTCQQPQAVL GTPNTAGSSP TTSRQRQSSF SPPAEVLDLT MNGAGLFSRL LLPHAVGGGG  240
RGRGSAEEEA AIVTCLAAVI SGGAAAAAPP PLIWPTSAPE ASQPSGVDVP AFVASAGHSP  300
SAADESVADE AAAAKMADMD YCFGQYDPST FGAAAADHRV LIGDDGDVQR VVAARIADMV  360
WPRYTRDTSA WETAGTSSMR GSID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141241841069OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033021e-177AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033481e-177AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149571e-177AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877896.11e-119uncharacterized protein LOC112937432
TrEMBLA0A0E0C9J60.0A0A0E0C9J6_9ORYZ; Uncharacterized protein
STRINGOMERI01G31900.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-18WRKY DNA-binding protein 62