 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OMERI01G31500.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 280aa MW: 28922.8 Da PI: 9.6135 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OMERI01G31500.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.2 | 1.1e-06 | 85 | 110 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck G++C+FaHg+
OMERI01G31500.1 85 KTRMCNKYNTAEGCKWGSKCHFAHGE 110
89**********************96 PP
|
| 2 | zf-CCCH | 36.7 | 7.1e-12 | 245 | 270 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +GdrC+FaHg+
OMERI01G31500.1 245 FKTKLCENFNK-GSCTFGDRCHFAHGE 270
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 78 | 26 | 44 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 28 | 43 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 7.629 | 32 | 45 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.1E-14 | 80 | 115 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.19E-8 | 83 | 114 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.97 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.727 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 3.4E-9 | 150 | 220 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.445 | 151 | 215 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 2.4E-14 | 154 | 219 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 7.31E-15 | 155 | 245 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 1.1E-10 | 155 | 216 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 8.46E-13 | 155 | 215 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 2.2E-17 | 242 | 277 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.58E-9 | 244 | 275 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.131 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.5E-7 | 244 | 270 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.7E-9 | 245 | 270 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MEAGGGKRAA PEGTNGAAKR AREIVLESTS GCPFGSSCHF LHNFPGGYQA AAKMTSHGGT 60
AVAAPPGRMP LGPGAPNGPP TSSVKTRMCN KYNTAEGCKW GSKCHFAHGE RELGKPMLLD 120
NSMPHPMGSM PFEAPPMPGP DIVPPSTFGA SAAAKISVDA SLAGGIIGKG GTNTKHISRM 180
TGAKLAIRDN ESNPNLKNIE LEGTFDQIKH ASAMVTELIV RISGNAPPAK NPGRGSHAGG 240
PGSNFKTKLC ENFNKGSCTF GDRCHFAHGE SELRKPPAAA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003609 | 0.0 | AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
