PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G27390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 410aa    MW: 44981.2 Da    PI: 10.3031
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G27390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.22.2e-321852772103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k++++++d++++ +++w   gn+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+h+sF +g+ +ll 
  OMERI01G27390.1 185 FVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDR---------WEFAHESFLRGQAQLLP 269
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i rkk++
  OMERI01G27390.1 270 RIVRKKKK 277
                      ****9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-35179268IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-50181274IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-31182274IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-28185274IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-17185208IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-17223235IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340224248IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-17236248IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MPRETARRFT PVCRHTWPVC DKPESSQNQA PPVTTSRGKS DASICSRRSP EPPSGHSLPS  60
HLPERARPKP VPPPPRRDPD KVGTRAHRAY VRYIDRNRYI GLTAPGRKYL ARSLPPLPPP  120
TNGTNLSEEK ASAFSYPVPR ARCHDRAGRI LANYTIGCGI MMGGDCKVHQ LQAAGDGGPG  180
AVAPFVAKTF HMVSDPSTNA VVRWGGAGNT FLVLDPAAFS DFLLPSYFKH RNFASFVRQL  240
NTYGFRKVDP DRWEFAHESF LRGQAQLLPR IVRKKKKGGA APGCRELCEE GEEVRGTIEA  300
VQRLRDEQRG MEEELQAMDQ RLRAAESRPG QMMAFLAKLA DEPGVVLRAM LAKKEELAAA  360
GNNGSDPCKR RRIGADTGRG GVTTGGDAAE MAQSRGTVPF PFSVLGQVFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-271562743129Heat shock factor protein 1
5d5v_B6e-271562743129Heat shock factor protein 1
5d5v_D6e-271562743129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368372KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663160.0AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633152.10.0heat stress transcription factor C-1b
SwissprotQ942D60.0HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A0E0C7H90.0A0A0E0C7H9_9ORYZ; Uncharacterized protein
STRINGOMERI01G26760.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-56heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]