PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G26280.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 245aa    MW: 25775.6 Da    PI: 7.9749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G26280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30159217159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  OMERI01G26280.1 159 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKNDPRYVVTMYEGIHNHV 217
                      59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-31146217IPR003657WRKY domain
SuperFamilySSF1182901.44E-26152218IPR003657WRKY domain
PROSITE profilePS5081131.158154219IPR003657WRKY domain
SMARTSM007748.2E-33159218IPR003657WRKY domain
PfamPF031061.3E-23160216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MYMAAAAAGA STPFNFCRHG SHAEYDAVFS GSWMARRPSA APHGGGASGS GSGSGFGAAS  60
YVAPTFGAAF RQQHLDLLDY LSDDQGVPAP PPAAVPSASY VTPAPAMAPA EPVVPDAVAA  120
AGGYPRSVAV AAAAVAGEGS DRTTTDKIAF RTRSDDEILD DGYKWRKYGK KSVKNSPNPR  180
NYYRCSTEGC NVKKRVERDK NDPRYVVTMY EGIHNHVCPG TVYYAAQDAA SGRFFVAGIS  240
HPDLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-24150219877Probable WRKY transcription factor 4
2lex_A6e-24150219877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085550.0AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence.
GenBankAY8706090.0AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635650.11e-177WRKY transcription factor WRKY24
TrEMBLA0A0E0C6Z61e-178A0A0E0C6Z6_9ORYZ; Uncharacterized protein
STRINGOMERI01G25590.11e-177(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-35WRKY DNA-binding protein 51