PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OMERI01G25790.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 543aa MW: 59723.8 Da PI: 5.7621

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G25790.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	27	48	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H OMERI01G25790.2 27 KCTKCPREFCSSINYRRHARVH 48 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.245	26	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHARVHRR TLQIEKDFLK 60 NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG 120 NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN 180 AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ 240 RLKDLKDEDV TDRFPGSVDG TTDSSGILNL KEATSDPGLY EQEDTQLSTP VASEDNSSFA 300 DLPVEHGIHD PGHEVNPSVI LSQQVFSRHR VGRTENLAQN SFASGGSAIG SKHPASVRHS 360 HYRGANAGAV SNRNKTWTWK VRTEIEEHSP KDELNIDDGQ EIVLNKKSRV LIGSISVAIE 420 DGSECLEDNQ YSKEYPTPAS QLNIGNHPVT KVMQPFNHGE EGNGYNAHND VEVNITPTAQ 480 DHSSSSVMTD GNNCSSCCNA GLAEGGGLRG AIFSSKEAAA FLSQRWKEAI NADHVKLVLC 540 PEG

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHARVHRR TLQIEKDFLK  60
NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG  120
NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN  180
AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ  240
RLKDLKDEDV TDRFPGSVDG TTDSSGILNL KEATSDPGLY EQEDTQLSTP VASEDNSSFA  300
DLPVEHGIHD PGHEVNPSVI LSQQVFSRHR VGRTENLAQN SFASGGSAIG SKHPASVRHS  360
HYRGANAGAV SNRNKTWTWK VRTEIEEHSP KDELNIDDGQ EIVLNKKSRV LIGSISVAIE  420
DGSECLEDNQ YSKEYPTPAS QLNIGNHPVT KVMQPFNHGE EGNGYNAHND VEVNITPTAQ  480
DHSSSSVMTD GNNCSSCCNA GLAEGGGLRG AIFSSKEAAA FLSQRWKEAI NADHVKLVLC  540
PEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	234	ERKRMKKL
2	232	242	KKLRQKEQRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102035	0.0	AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611822.1	0.0	uncharacterized protein LOC4347911
Refseq	XP_015611823.1	0.0	uncharacterized protein LOC4347911
TrEMBL	A0A0E0C6Q8	0.0	A0A0E0C6Q8_9ORYZ; Uncharacterized protein
STRING	OMERI01G25010.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-84	C2H2-like zinc finger protein