PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23360.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 382aa    MW: 39883.5 Da    PI: 7.5546
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33175232259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  OMERI01G23360.1 175 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 232
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-35159234IPR003657WRKY domain
SuperFamilySSF1182901.07E-29166234IPR003657WRKY domain
PROSITE profilePS5081132.535169234IPR003657WRKY domain
SMARTSM007742.6E-39174233IPR003657WRKY domain
PfamPF031061.9E-26175232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSGEYQFQDE LAPLFARPGG GAGEMQMLPS SWFADYLQAG TPMQMDYDLM CRALELPVGE  60
DVKREVGVVD VVAAGCGGAP PLTPNTTSSM STSSSEGVGG GGGGGGGVGA GEEDSPARCK  120
KEEEDENKEE GKGEEEGHKN KKGSAAKGGK AGKGEKRARQ PRFAFMTKSE VDHLEDGYRW  180
RKYGQKAVKN SPYPRSYYRC TTQKCPVKKR VERSYQDPAV VITTYEGKHT HPIPATLRGS  240
THLLAAHAQA AAAAAAHQLH HHHGHGHHGM APPLPLGSGA AAQFGRSSGI GGGIDVLSSF  300
LPRAAAAHAH HGMTTQTTTS HGLNGAISGG GVSSATTSAV TVAASAQPSS PAALQMQHFM  360
AQDLGLLQDM LLPSFIHGTN QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28165235878Probable WRKY transcription factor 4
2lex_A4e-28165235878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418440.0AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418550.0AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706040.0AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875631.11e-178WRKY transcription factor WRKY24-like isoform X2
TrEMBLA0A0E0C5Q60.0A0A0E0C5Q6_9ORYZ; Uncharacterized protein
STRINGOMERI01G22560.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-49WRKY DNA-binding protein 71