PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G19150.6
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 324aa    MW: 34144 Da    PI: 8.8895
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G19150.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.4e-29143202159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++tY g Hnh+
  OMERI01G19150.6 143 VKDGCQWRKYGQKTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTTYDGVHNHP 202
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-30131202IPR003657WRKY domain
SuperFamilySSF1182903.92E-26136203IPR003657WRKY domain
PROSITE profilePS5081127.209138204IPR003657WRKY domain
SMARTSM007748.9E-35143203IPR003657WRKY domain
PfamPF031064.5E-25144202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNTFAFLRDE VQKASEKVHR HHANDDEAGL FLSLGLSLGS SPADTGHASK KDEADAGDGG  60
YLALALRCDP AAGEPIVHPK RQRTTTNSSS SSSICGEYGD GGAAAALPGG HDDDDRSCMI  120
TAASTANRPG RVVLRTRCSA PTVKDGCQWR KYGQKTAKGN PWPRGYYRCT GAPGCPVKKQ  180
VQRCNHDTSV LVTTYDGVHN HPITPYAAAL PPSSSSSSAA AAAAMLASSS SSSSTLSGLQ  240
RAMSSSIIAM PAAQSSWSQR NYPIQADVVA KAIWDPKFQA TVAAAVASYV RDREQSVAAL  300
PVGRVPESSS TWLLHADKRR TSQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-24131205275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033001e-148AP003300.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0700A11.
GenBankAP0034921e-148AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02.
GenBankAP0149571e-148AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642021.11e-143probable WRKY transcription factor 72
TrEMBLA0A0E0C3Y60.0A0A0E0C3Y6_9ORYZ; Uncharacterized protein
STRINGOBART01G20970.11e-145(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.15e-39WRKY DNA-binding protein 9