PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G19150.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 383aa    MW: 40094.4 Da    PI: 7.7945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G19150.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.2e-28202261159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++tY g Hnh+
  OMERI01G19150.5 202 VKDGCQWRKYGQKTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTTYDGVHNHP 261
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-30190261IPR003657WRKY domain
SuperFamilySSF1182905.23E-26195262IPR003657WRKY domain
PROSITE profilePS5081127.209197263IPR003657WRKY domain
SMARTSM007748.9E-35202262IPR003657WRKY domain
PfamPF031065.8E-25203261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNTFAFLRDE VQKASEKVHR HHANDDEAGL FLSLGLSLGS SPADTGHASK KDEADAGDGG  60
YLALALRCDP AAGEPIVHRH HANDDEAGLF LSLGLSLGSS PADTGHASKK DEADAGDGGY  120
LALALRCDPA AGEPIVHPKR QRTTTNSSSS SSICGEYGDG GAAAALPGGH DDDDRSCMIT  180
AASTANRPGR VVLRTRCSAP TVKDGCQWRK YGQKTAKGNP WPRGYYRCTG APGCPVKKQV  240
QRCNHDTSVL VTTYDGVHNH PITPYAAALP PSSSSSSAAA AAAMLASSSS SSSTLSGLQR  300
AMSSSIIAMP AAQSSWSQRN YPIQADVVAK AIWDPKFQAT VAAAVASYVR DREQSVAALP  360
VGRVPESSST WLLHADKRRT SQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-24190264275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033001e-147AP003300.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0700A11.
GenBankAP0034921e-147AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02.
GenBankAP0149571e-147AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642021.11e-131probable WRKY transcription factor 72
TrEMBLA0A0E0C3Y50.0A0A0E0C3Y5_9ORYZ; Uncharacterized protein
STRINGOBART01G20970.11e-133(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-38WRKY DNA-binding protein 9