PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G18860.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 356aa    MW: 39177.8 Da    PI: 5.9399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G18860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.6e-14178225355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++l+P+ +      K++Ka+iL k++ Y+k+L+
  OMERI01G18860.1 178 KNHVMSERRRREKLNEMFLILKSLVPSiD------KVDKASILAKTIAYLKELE 225
                      5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.082175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.93E-15178229No hitNo description
SuperFamilySSF474593.27E-18178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-18179235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11179225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKKLIKALSP LYLVVIIIHK MVSEEPNVVN RITTAFWDLQ LPACSDEPIS SGTPSSPSSP  60
PKETGDANTV LDDLFLVQSD AIPAGGDLQE EDHRLGEDLG QQQAATAMEI DDDVIYSLIR  120
NWDNDSSSSW IELLDHVVDL DKEAVAGGGG GEAAQRLLKK ALGGGGAWMN RAAGSSIKNH  180
VMSERRRREK LNEMFLILKS LVPSIDKVDK ASILAKTIAY LKELERRVQD LESGKKVSRP  240
PKRKPCSETI IGGGDAGAVN EHHHWVLSES QEGNPSDVRV IVMDKDELHL EVHCRWKELL  300
MTRVFDAIKS LRLDVLSVQA SAPDGLLGLK IQAKVCLSHS IETPHVILSY YKIIPH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188ERRRRE
2184189RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638330.10.0anthocyanin regulatory R-S protein
SwissprotP135267e-56ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0C3U40.0A0A0E0C3U4_9ORYZ; Uncharacterized protein
STRINGORUFI01G22990.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-26bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]