PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G10280.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 546aa    MW: 59312.9 Da    PI: 4.6395
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G10280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.6e-40163222261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s
  OMERI01G10280.1 163 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 222
                      7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31160220IPR003851Zinc finger, Dof-type
PfamPF027013.2E-32165221IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.863167221IPR003851Zinc finger, Dof-type
PROSITE patternPS013610169205IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MCDKDPGIKL FGRVIPLAPE AEAAAAADGS DQPAAAAAAA EAEPAAQDED QHKETEESKD  60
DEMKVDVPQE EEDNEMKVDA PREKKDNEVT ADVPEEKGND EMRVDASESI ESIEPVSRST  120
LDNKKEDQGQ MNNVEEKAAS DSKDENEKTA NDESGQDKVL KKPDKILPCP RCNSMDTKFC  180
YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKSK SSSLHYRHLL MAPDCMMGPR  240
VETSKSMNPE AFASAHSPIA RNETILKFGP EVPLCESMAS VLNIQEQNGT NAAVVPTGEN  300
QEDNSCISSI TSHNVLPENA AQVDKNSTPV YCNGVGPVPQ YYLGAPYMYP WNIGWNNVPM  360
MVPGTSMPES ASQSESCSTS SAPWMNMNSP MMPVASRLSA PPFPYPLVPP ALWGCLSSWP  420
ATAWNIPWIR TNGGCMSPSS SSNSSCSGNG SPLGKHSRDS SLPLKEDKEE KSLWVPKTLR  480
IDDPDEAAKS SIWATLGIKP GDPGIFKPFQ SKGESKGQAA SESRPARALQ ANPAALSRSQ  540
SFQETS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0013830.0AP001383.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0453A06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618265.10.0cyclic dof factor 2
TrEMBLA0A0E0C0B50.0A0A0E0C0B5_9ORYZ; Uncharacterized protein
STRINGOMERI01G10170.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-71cycling DOF factor 2