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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OMERI01G09440.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
GeBP |
Protein Properties |
Length: 385aa MW: 41064.9 Da PI: 4.8893 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OMERI01G09440.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 92.3 | 5.4e-29 | 68 | 170 | 2 | 96 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqk 87
lfqrlw++e e+++L+G++df+a++g+ +++ d+ fy+ +++++sf+++ksqlveK+rrLKkK++ + ++ + ++f+++h+
OMERI01G09440.1 68 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRLCAARmasspHAAAAGFAFRTPHEGA 161
79************************99877778***********************************99996666556677889******** PP
DUF573 88 ifelskkiW 96
i++l++ iW
OMERI01G09440.1 162 IYDLARHIW 170
********* PP
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Sequence ? help Back to Top |
Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MAADELAAAS HSSSSPADED DEEGTDSDGS NPDHAAAPHA PPEPTAAIPP PPPPQLQPGA 60 GAEDSRRLFQ RLWTDEEELL ILRGFLDFTA RRGTTFASHQ YDTGPFYDEI RRRLSFDFTK 120 SQLVEKLRRL KKKYRLCAAR MASSPHAAAA GFAFRTPHEG AIYDLARHIW PPALKRDGTA 180 SDDDDINPAA AAATAAVTTP VAMEDGFGGS APTPTPTPRG RGGRRVRRRM AQEQEAAALP 240 SAPALTSTDG AHQEPLVAAM ENTLPQIAQL PPVSETEPMP VIANGANEEA VRSVLSRLLK 300 EFITSFAVVG QTGPGMGLNM GFGGAGLNAD IAGLGFGIAG LNPGLPGADR WRQQQILELE 360 VYLKRIELVR EQVTAALDEL RSSEG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 5e-19 | DNA-binding storekeeper protein-related transcriptional regulator |