PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G09440.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 385aa    MW: 41064.9 Da    PI: 4.8893
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G09440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57392.35.4e-2968170296
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqk 87 
                      lfqrlw++e e+++L+G++df+a++g+   +++ d+  fy+ +++++sf+++ksqlveK+rrLKkK++ + ++      +    ++f+++h+  
  OMERI01G09440.1  68 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRLCAARmasspHAAAAGFAFRTPHEGA 161
                      79************************99877778***********************************99996666556677889******** PP

           DUF573  88 ifelskkiW 96 
                      i++l++ iW
  OMERI01G09440.1 162 IYDLARHIW 170
                      ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.1E-2769170IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAADELAAAS HSSSSPADED DEEGTDSDGS NPDHAAAPHA PPEPTAAIPP PPPPQLQPGA  60
GAEDSRRLFQ RLWTDEEELL ILRGFLDFTA RRGTTFASHQ YDTGPFYDEI RRRLSFDFTK  120
SQLVEKLRRL KKKYRLCAAR MASSPHAAAA GFAFRTPHEG AIYDLARHIW PPALKRDGTA  180
SDDDDINPAA AAATAAVTTP VAMEDGFGGS APTPTPTPRG RGGRRVRRRM AQEQEAAALP  240
SAPALTSTDG AHQEPLVAAM ENTLPQIAQL PPVSETEPMP VIANGANEEA VRSVLSRLLK  300
EFITSFAVVG QTGPGMGLNM GFGGAGLNAD IAGLGFGIAG LNPGLPGADR WRQQQILELE  360
VYLKRIELVR EQVTAALDEL RSSEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644705.20.0probable transcription factor At3g04930
TrEMBLA0A0E0BZZ80.0A0A0E0BZZ8_9ORYZ; Uncharacterized protein
STRINGOMERI01G09410.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-19DNA-binding storekeeper protein-related transcriptional regulator