PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G05540.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 276aa    MW: 29608.1 Da    PI: 10.2319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G05540.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32199257159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  OMERI01G05540.2 199 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 257
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33184257IPR003657WRKY domain
SuperFamilySSF1182901.57E-28191258IPR003657WRKY domain
PROSITE profilePS5081129.356194259IPR003657WRKY domain
SMARTSM007749.8E-37199258IPR003657WRKY domain
PfamPF031064.7E-25200256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MFPSPGRAVM ALGHHGAARQ PPCTAAASSS TTSAAAPATA TTTTTVAFSF QQPTPTPSHH  60
HHHHHGVLGY SPIVLDHHHP TTAASSHAPS PPTLHHRHGG GLHAAAPPPR SSPPHPWSCE  120
EGDHRGRPQM GNKGEAAAAM GAMGINDAGN STAAAAQHHL GVGAVRMKKV GGGGGGGKAR  180
RKVREPRFCF KTMSDVDVLD DGYKWRKYGQ KVVKNTQHPR SYYRCTQDNC RVKKRVERLA  240
EDPRMVITTY EGRHVHSPSR DDDDAARASA EMTFIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25190256874Probable WRKY transcription factor 4
2lex_A3e-25190256874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087550.0AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632233.11e-110probable WRKY transcription factor 13 isoform X2
SwissprotQ9SVB73e-56WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0E0BY930.0A0A0E0BY93_9ORYZ; Uncharacterized protein
STRINGOMERI01G05560.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-46WRKY DNA-binding protein 13