PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G03770.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 810aa    MW: 88588.6 Da    PI: 8.324
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G03770.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.31.2e-06262279118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C   CH GpCppC
  OMERI01G03770.3 262 CGIHRCPVDCHDGPCPPC 279
                      ****************** PP
2zf-NF-X116.71.6e-05369388119
         zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                      CG+HkC + CH+G C + C+
  OMERI01G03770.3 369 CGRHKCPERCHRGSCVEtCR 388
                      ***************99997 PP
3zf-NF-X116.71.6e-05422441120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+H C + C+eG+C pCp+
  OMERI01G03770.3 422 CGRHACRRRCCEGDCAPCPE 441
                      ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.547106162IPR019787Zinc finger, PHD-finger
SuperFamilySSF578502.47E-6108166No hitNo description
PROSITE patternPS013590109159IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.14109160IPR001841Zinc finger, RING-type
SMARTSM004380.02209227IPR000967Zinc finger, NF-X1-type
PfamPF014220.062210226IPR000967Zinc finger, NF-X1-type
CDDcd060086.81E-9252300No hitNo description
SMARTSM004380.0011262281IPR000967Zinc finger, NF-X1-type
PfamPF014225.1E-5262279IPR000967Zinc finger, NF-X1-type
CDDcd060082.67E-7305345No hitNo description
SMARTSM004380.082315334IPR000967Zinc finger, NF-X1-type
PfamPF014220.36315333IPR000967Zinc finger, NF-X1-type
CDDcd060084.92E-9359408No hitNo description
SMARTSM004380.035369389IPR000967Zinc finger, NF-X1-type
PfamPF014220.0029369388IPR000967Zinc finger, NF-X1-type
CDDcd060083.56E-9412460No hitNo description
SMARTSM004380.087422441IPR000967Zinc finger, NF-X1-type
PfamPF014220.0036422440IPR000967Zinc finger, NF-X1-type
SMARTSM0043897449480IPR000967Zinc finger, NF-X1-type
PfamPF014220.035449460IPR000967Zinc finger, NF-X1-type
PfamPF014229.8469479IPR000967Zinc finger, NF-X1-type
PfamPF0142279488497IPR000967Zinc finger, NF-X1-type
SMARTSM00438190570611IPR000967Zinc finger, NF-X1-type
PfamPF014220.31570580IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1624642IPR000967Zinc finger, NF-X1-type
PfamPF014221.6624641IPR000967Zinc finger, NF-X1-type
SMARTSM004380.44687708IPR000967Zinc finger, NF-X1-type
PfamPF01422140689701IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MPFSYAAAAS GSASSSRKPV PVAAAAARRP VPSPAAAAAP APSPSNPSAV SDSDPSSYSS  60
SGEEADLTAS DPAAASVISS YLSVAGDGAD LSKVGIFLSS AARRRSPPCL ICLDPIRPSD  120
PVWSCSASCF ALLHLHCIQS WAHQSSSAAP SPTWGCPKCR FSYPKSQTPT SYLCFCSKTV  180
DPAPDPWILP HSCGDVCGRR LNADHDSGCE HNCLLLCHPG PCPPCPAIVP NAMCFCGSHR  240
ETRRCSHQRY SCSGKCNKRL GCGIHRCPVD CHDGPCPPCA VRGKHKCECG ETMEERLCSE  300
RVFQCKRECG GMLQCGKHSC ERGCHAGKCG GCPLQGRRTC PCGKKDYPSL DCDAEAATCG  360
STCEKVLGCG RHKCPERCHR GSCVETCRLV ITKSCRCGGL KKEVPCYQEL TCERKCQRLR  420
NCGRHACRRR CCEGDCAPCP EVCDKRLRCG NHKCLSPCHR HKLECRPHKC HYGVCPPCKL  480
ICGEELSCGH RCKLRCHGPI APPNPEFTLR PIKKKKEKHI DCTPGTPCPP CQEVVLVPCF  540
GQHLGQERAI LCSKRRQFPC QNLCGNPLNC GNHYCTKACH VLQIPLGQPE GDQFAILSLA  600
SASAFAEPCE ECNLPCQRVR EPPCSHPCPL PCHLNDCPPC KALVKRPCHC GAMVHAFECM  660
YYNNLNATEQ QKVRSCGGPC HRKLPNCPHL CSEICHPGQC PSVDQCMKKV KAADSELHLR  720
KIQEIKSPAV EVENVPKRRK RRNRGQESVE SSKFQEIKAV ALKFLLVIFL SIIVVAGLYL  780
LWKGVYRLSD WMNEMEEQRA RQRHLKPGRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1735741PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667650.0AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0E0BXF80.0A0A0E0BXF8_9ORYZ; Uncharacterized protein
STRINGOMERI01G03710.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors