PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G21600.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 168aa    MW: 17949.3 Da    PI: 11.6745
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G21600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.6e-1160109150
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      e++++r rr+++NRe+ArrsR+RK+  ++eL+ k+ +L a  ++L+ +l 
  OGLUM12G21600.1  60 EERRRRLRRRISNRESARRSRARKQRHLDELRAKASALRATSRDLAARLR 109
                      68899*************************************99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.4E-756109No hitNo description
SMARTSM003381.5E-758124IPR004827Basic-leucine zipper domain
PfamPF001703.8E-760108IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.57662108IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.29E-864109No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAGLPFPSDS DTALEAFLAD IGFGAPCTEA APAPSPSHPD TTAAAATDEP VMAGDDQADE  60
ERRRRLRRRI SNRESARRSR ARKQRHLDEL RAKASALRAT SRDLAARLRG ARARAALVAL  120
TNAHLRDEAG KLARRLAAAR RVIALRQLYS AAAAGGGFEM QALASLIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683RRSRARKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619047.13e-64ocs element-binding factor 1
TrEMBLA0A0E0BVM51e-109A0A0E0BVM5_9ORYZ; Uncharacterized protein
STRINGOGLUM12G21600.11e-110(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151251919