PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G20110.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 466aa    MW: 49203.9 Da    PI: 6.6706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G20110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.93.2e-17278324455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  OGLUM12G20110.1 278 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 324
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-21271331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.35E-19271328No hitNo description
SuperFamilySSF474594.58E-21272337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-14278324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNQFVPDWNT TSMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE RTTAAAAAMA  60
EDESASWFQY PVDDVLEKDL FTELFGEMTA AGGGGGDVRR AACKEERGAV AAFQSRMMPP  120
PWPARGKAEF GDIDDVCGVS EVVMAAKMDG EAKVAAAEAV GESSMLTIGS SICGSNHVQT  180
PPAGAAPPPV GNGKVAAARR AHDTATVASS SMRSRSCTAK AEPRDVAAAG GGGKRKHRGA  240
AAMESGSPSE DVEFESAAAM CSPAQKTTTA KRRRAAEVHN LSERRRRDRI NEKMKALQEL  300
IPHCNKTDKA SMLDEAIEYL KSLQLQLQMM WMGGGMAPPA VMFPAAGVHQ YMQRMGAVGM  360
GPPHMASLPR MPPFMAPPPA AVQSSPVVSM ADPYARCLAV DHLQPPSPML AAAKNLQQQQ  420
NTAEPPPPPP AGSLPPAATA QPLTPDDILH KKYDNCSKSE SKGGTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271286RRRAAEVHNLSERRRR
2282287ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667630.0AK066763.1 Oryza sativa Japonica Group cDNA clone:J013074J19, full insert sequence.
GenBankCT8297130.0CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618078.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
RefseqXP_015618079.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A0E0BV210.0A0A0E0BV21_9ORYZ; Uncharacterized protein
STRINGOGLUM12G20110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-26phytochrome interacting factor 3