PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 444aa    MW: 49643.2 Da    PI: 6.6433
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.65.8e-14137174340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+C+CkkskClk+YC Cfa+g++Cse+C C+ C Nk+
  OGLUM12G19870.1 137 CKSCSCKKSKCLKLYCVCFASGSHCSESCGCDPCYNKS 174
                      89**********************************97 PP
2TCR46.19.4e-15213248439
              TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  OGLUM12G19870.1 213 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 248
                      79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544954.13E-2611100IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.102.8E-241199IPR016135Ubiquitin-conjugating enzyme/RWD-like
SMARTSM002120.004516158No hitNo description
PROSITE profilePS5012714.216116IPR000608Ubiquitin-conjugating enzyme E2
PfamPF001799.8E-104395IPR000608Ubiquitin-conjugating enzyme E2
SMARTSM011144.5E-9135176IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.854136250IPR005172CRC domain
PfamPF036381.1E-9138173IPR005172CRC domain
SMARTSM011147.8E-13210251IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.3E-11213247IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MASSGDPSAV VVPRNFRLLE ELERGEKGIG DGSVSYGMDD ADDIYMRSWT GTIIGPHNTV  60
HEGRIYQLKL FCDKDYPDRP PTVKFHSRIN MTCVNPENGL WYYAGSFSGI ASLNLLFVLS  120
SDYHVALTRK TDEGEGCKSC SCKKSKCLKL YCVCFASGSH CSESCGCDPC YNKSIHGVPR  180
STPALPLKAV QTLETGQDSV EQLIRSPMDF GRRKCTCKKS GCLKKYCDCY QGGAGCSINC  240
KCDDCKNPYG RKVGVILDGK NILAGPTPNE RNGTEADSSD DEEDDYYMNR PLSPVSPSPV  300
SRESSFQQET LVGVEVQTMN GHLYPKPLTQ VRPESWQLTR RPTEEVRGEA WHYLRRPSED  360
GTSDVMEGHA DPKFQRDNKQ LENHVDRYSI PRCIEVMNAM ADLSPIEKSL APDVFLDPSN  420
REIFLSLTVD IRTMWLKRKM KSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2a4d_A4e-31810020112Ubiquitin-conjugating enzyme E2 variant 1
6d6i_A2e-318100395Ubiquitin-conjugating enzyme E2 variant 1
6d6i_D2e-318100395Ubiquitin-conjugating enzyme E2 variant 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086640.0AK108664.1 Oryza sativa Japonica Group cDNA clone:002-148-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618281.10.0protein lin-54
TrEMBLA0A0E0BUZ00.0A0A0E0BUZ0_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19870.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-24TESMIN/TSO1-like CXC 2