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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OGLUM12G19710.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
ERF |
Protein Properties |
Length: 250aa MW: 27048 Da PI: 6.5058 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OGLUM12G19710.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 45.4 | 2.1e-14 | 77 | 128 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+++G++ ++ grW AeIrd s +g r+++g++ tae Aa+a++a +++++g+
OGLUM12G19710.1 77 RFHGIHMRS-YGRWSAEIRDSSYRG--HRVWIGTYATAEAAARAYDAEARRIHGA 128
589999998.8*********65555..*************************995 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MCGGCLIPDE PVGKPARRTR AAAAGGDSGD GGKHGRRLCP GAAPCNCKPR RRAGAADDDD 60 VGRRRRTTRT RAASEVRFHG IHMRSYGRWS AEIRDSSYRG HRVWIGTYAT AEAAARAYDA 120 EARRIHGAKA NTNFPPPPND DDINGAPPPW DLEAYMRFLG EVELDDGGAE PPPPLNGNPE 180 LHMELASATQ SVHGDDEPWG LDKYMRFLSE VELDDGGAPP PPTPSQHGGV AAGSPQYGCR 240 YDYLLLMMCN
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 49 | 65 | RRRAGAADDDDVGRRRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB510482 | 0.0 | AB510482.1 Oryza rufipogon Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: W0120. |
GenBank | AB510484 | 0.0 | AB510484.1 Oryza nivara Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: W0106. |