PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G11100.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 434aa    MW: 46954.4 Da    PI: 6.5991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G11100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.48e-2191332128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        GfrF+P++ee++++yL + ++g++ + +e  i+++d+y + eP+dL  k    +++ + + +fF+  ++ +    + +r++  g W ++ + 
  OGLUM12G11100.1   9 KLGFRFNPSQEEVITYYLPRLIAGHPPKDTEGyIHRADVYGAnEPRDLAgKyapVARSPNGDRFFFTGCKRVKG---KFSRSAGGGAWVSQSS- 98 
                      67************************6655555*******8769****843443333334478***99998764...7999999*****8866. PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k++++++g ++g  k + f     + g+ktdW+m+ey+l
  OGLUM12G11100.1  99 KDLKNREGIKIGEVKNFRFK----KGGNKTDWLMEEYHL 133
                      888888*************8....56889********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.6568152IPR003441NAC domain
SuperFamilySSF1019411.7E-238152IPR003441NAC domain
PfamPF023652.4E-1411133IPR003441NAC domain
PRINTSPR012178.0E-9171187No hitNo description
PRINTSPR012178.0E-9212233No hitNo description
PRINTSPR012178.0E-9268285No hitNo description
PRINTSPR012178.0E-9356381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MASLDLLLKL GFRFNPSQEE VITYYLPRLI AGHPPKDTEG YIHRADVYGA NEPRDLAGKY  60
APVARSPNGD RFFFTGCKRV KGKFSRSAGG GAWVSQSSKD LKNREGIKIG EVKNFRFKKG  120
GNKTDWLMEE YHLCGKEAGG VVEPVVCRIY VSPRAAPDSV VHQESAALPP PQELVPPPQE  180
FAPPPYPAAQ AAPQAPAPPR QVPVITQQQA PPQKRPAAPV AEPPCATKKM KGAVSAKPMA  240
PQSSVTASAA PPRCAVAPSQ HHPPFQTYPT DPFEPPAPAA SVTQPSVPAT PEQGPAYVPD  300
PADIGMEMDE LMSFLDSTPV DGILPSQLFE YDELAKELED ALQGGGEEDG NDNPPRCATP  360
PTPPPPRPAS WPAMAPLPPH PPILTFPKDP GGCDKQSQGG YRVLLKDMGD DQIDQQWLKV  420
YLKDYHHLMK SCKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619212.10.0vegetative cell wall protein gp1
TrEMBLA0A0E0BRW00.0A0A0E0BRW0_9ORYZ; Uncharacterized protein
STRINGOGLUM12G11100.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.12e-13NAC domain containing protein 77