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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G07210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 214aa MW: 21968.2 Da PI: 4.7366 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.1 | 1.3e-06 | 5 | 45 | 6 | 40 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +e+ e+ C ++ lC+ C + H+ H +v OGLUM12G07210.1 5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkHPRV 45 *****************************656777777766 PP | |||||||
2 | zf-B_box | 24.7 | 5e-08 | 64 | 99 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 ++C+ ++ek +fC +++ llC++C + H H OGLUM12G07210.1 64 PTCDICQEKTGYFFCLEDRALLCRSCDVDVHTAtaH 99 79**************************99955663 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.641 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.8E-8 | 5 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.25E-5 | 5 | 47 | No hit | No description |
SMART | SM00336 | 1.0E-10 | 61 | 108 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.887 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.9E-6 | 64 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.34E-5 | 66 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHPRVALLLP SSSSAAAGDD 60 DHHPTCDICQ EKTGYFFCLE DRALLCRSCD VDVHTATAHA AAHRRFLITG VRIGGSVDAA 120 AAADVIVSPT SSSIAPAGSA SSNHAVAGAG AAGNNNGRSP APVRFSGGDG GVEPEQQWPW 180 SDVFAADDDD DVSAAMEQCY YHGISEPHSS SLTG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067820 | 0.0 | AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618519.1 | 1e-118 | B-box zinc finger protein 23 | ||||
TrEMBL | A0A0E0BQD4 | 1e-152 | A0A0E0BQD4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM12G07210.1 | 1e-153 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-34 | light-regulated zinc finger protein 1 |