PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G06270.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 372aa    MW: 40883.3 Da    PI: 9.8224
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G06270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.11.6e-072402731750
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      A+rsR RK+++i+eLe++v++L++e  +   e++
  OGLUM12G06270.1 240 AQRSRVRKLQYIAELERRVQALQTEGVEVSAEMD 273
                      89*********************99776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-6229288IPR004827Basic-leucine zipper domain
CDDcd147039.13E-16230280No hitNo description
SuperFamilySSF579597.55E-6239282No hitNo description
Gene3DG3DSA:1.20.5.1707.4E-7240295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMANARFQKQ ALLPPRSPFP AAVGAAPSPS PHAELGPIAR PRDAPHRHGH QRTSSESVLI  60
DEQPSWLDDL LDEPEAAARP HGRPGHRRSS SDSFTLFDGG ASAAAAGMYD NVFDGMRGRG  120
GGGQQVGSWG GVPEFFPEQS SFGRPQGQGG RPWDSRLMLR QGGGGGGGMP VPMREMNGGH  180
HGPPNAFGDH GHGSLPNGVD RKGPGDSAHD QRMGAERKEG AHLRHSQSEA DTKRAKQQYA  240
QRSRVRKLQY IAELERRVQA LQTEGVEVSA EMDFLGQQNI MLDLENKTLK QRLESLSQEH  300
LIKRFQQEMF EREIGRLRSL FQQQQQQQHI PQQQGPTHSR SNSRDLDSQF ANMSLKHGDP  360
NSGRDAVPGL RI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875550.0AK287555.1 Oryza sativa Japonica Group cDNA, clone: J065019F14, full insert sequence.
GenBankAK2877160.0AK287716.1 Oryza sativa Japonica Group cDNA, clone: J065134G21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618309.10.0uncharacterized protein At4g06598
RefseqXP_025877630.10.0uncharacterized protein At4g06598
TrEMBLA0A0E0BQ110.0A0A0E0BQ11_9ORYZ; Uncharacterized protein
STRINGOGLUM12G06270.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33103666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-60bZIP family protein