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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G04560.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 900aa MW: 99981.5 Da PI: 8.4446 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80.3 | 2.7e-25 | 90 | 185 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 +Wt+++v++Li+a+++++e+ ++++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d OGLUM12G04560.2 90 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 183 7*********************9877778889999**********************************************5499999999988 PP trihelix 84 ql 85 + OGLUM12G04560.2 184 CM 185 77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-19 | 88 | 212 | No hit | No description |
SuperFamily | SSF81383 | 1.83E-6 | 505 | 557 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 2.8E-6 | 510 | 557 | No hit | No description |
Pfam | PF00646 | 1.2E-11 | 513 | 566 | IPR001810 | F-box domain |
SuperFamily | SSF54518 | 2.01E-97 | 563 | 750 | IPR025659 | Tubby C-terminal-like domain |
Gene3D | G3DSA:3.20.90.10 | 2.5E-92 | 573 | 746 | IPR000007 | Tubby, C-terminal |
Pfam | PF01167 | 1.8E-93 | 578 | 894 | IPR000007 | Tubby, C-terminal |
PRINTS | PR01573 | 1.5E-73 | 630 | 646 | IPR000007 | Tubby, C-terminal |
PRINTS | PR01573 | 1.5E-73 | 646 | 670 | IPR000007 | Tubby, C-terminal |
PRINTS | PR01573 | 1.5E-73 | 696 | 723 | IPR000007 | Tubby, C-terminal |
Gene3D | G3DSA:3.20.90.10 | 2.5E-92 | 791 | 894 | IPR000007 | Tubby, C-terminal |
SuperFamily | SSF54518 | 2.01E-97 | 795 | 900 | IPR025659 | Tubby C-terminal-like domain |
PRINTS | PR01573 | 1.5E-73 | 801 | 818 | IPR000007 | Tubby, C-terminal |
PRINTS | PR01573 | 1.5E-73 | 819 | 835 | IPR000007 | Tubby, C-terminal |
PROSITE pattern | PS01200 | 0 | 819 | 832 | IPR018066 | Tubby, C-terminal, conserved site |
PRINTS | PR01573 | 1.5E-73 | 857 | 876 | IPR000007 | Tubby, C-terminal |
PRINTS | PR01573 | 1.5E-73 | 878 | 900 | IPR000007 | Tubby, C-terminal |
PROSITE pattern | PS01201 | 0 | 885 | 900 | IPR018066 | Tubby, C-terminal, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence Send to blast |
MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHRQHAKNGM 60 SDDEEHGVNE DATDSQSGKG KKGAAWQRMK WTDSMVKLLI TAVSYTGEDP GADSGAGKRN 120 SAIMQKKGKW KAISKVMGER GCSVSPQQCE DKFNDLNKRY KRLTDILGRG TACKIVENHA 180 LLDCMSNLSD KMKDDARKIL SSKHLFYEEM CSYHNNNRVS LPEDPALQRS LQLALRCKDE 240 HDLRRGTSGD ADEDDQSVDS DSEEENDEEH YTLQGDKSAL PMHKRLRHMT DQEDVGFGNS 300 SSSHGCSRRS DSHGISLDIN KAFPDGTNLA LAQKDLATQS ADLEEQRLQI EVQAVYLAKQ 360 RLKWERFSKN KDRELEQMRL ENEKMRLENK RLELEVRHKD RVPPTLVQPL PLVLSFPSSS 420 SSSSDPHASS ASASLPRRPP LAAAGATPER GEAEMSFRSI VRDVRDGFGS LSRRGFEVRL 480 VGHRRGRSHS AVHELRDGHA AAAAAADVVQ SSCWANLPPE LLRDVIERLE ASEAAWPSRK 540 NVVACAAVCR TWRDMCREIV KNPEFCGKIT FPVSLKQPGP RDGAIQCFIK RDKSTQTYNL 600 YLCLSSAVLV ESGKFLLSAK RYSRATCTEY TIFMSADNTS RSSNMYIGKL RSNLLGTKFV 660 IYDTQPPCNT ANVSQSGKTS RRFYSRKVSP KNPSSTYSIA QVSYELNVLG TRGPRRMNCV 720 MHSIPASSLE AGGTVPCQPD SVLARSLDES FGSISFSKSS IMDRAIRFSS SRYSDISVGG 780 PMVGGQALGD SDESKERPLI LRNKAPRWHE QLQCWCLNFK GRVTVASVKN FQLVAATQPA 840 AGAPTPSQPA PPPPPDHDKV ILQFGKVAKD MFTMDYRYPL SAFQAFAICL SSFDTKLACE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2fim_A | 8e-46 | 577 | 900 | 31 | 276 | Tubby related protein 1 |
2fim_B | 8e-46 | 577 | 900 | 31 | 276 | Tubby related protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU847004 | 0.0 | EU847004.1 Oryza sativa Japonica Group clone KCB831C11 TUBBY protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619922.1 | 0.0 | tubby-like F-box protein 14 | ||||
Swissprot | Q2QXB2 | 0.0 | TLP14_ORYSJ; Tubby-like F-box protein 14 | ||||
TrEMBL | A0A0E0BPE2 | 0.0 | A0A0E0BPE2_9ORYZ; Tubby-like F-box protein | ||||
STRING | OGLUM12G04560.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 7e-88 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
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