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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OGLUM12G04110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
NAC |
| Protein Properties |
Length: 307aa MW: 32579.4 Da PI: 6.8741 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM12G04110.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 130.1 | 1.7e-40 | 19 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+pGfrF Pt+eel+ +yL+++++g++ ++++vi+ vd+y ++P++L + ++++++++w+fF++r++++ +g r+ r+t sgyWkatg+
OGLUM12G04110.1 19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAAmagvATAGDREQWFFFCPRAERELHGGRPARTTPSGYWKATGSPS 112
69**********************995666778**************8445544444666********************************** PP
NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
v+s+ +++g+k+t+vfy+grap+g+kt+W m+ey++
OGLUM12G04110.1 113 FVFSSsataAARVIGVKRTMVFYQGRAPSGTKTRWKMNEYKA 154
***9876666667***************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY 60
HPSQLAAMAG VATAGDREQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSFVFSSSAT 120
AAARVIGVKR TMVFYQGRAP SGTKTRWKMN EYKAVAAAAD DDDHNAAGVA VQLPPMAPPP 180
SSSACVRLRN ELSVCRVYVS TGTLRSFDRR PLDAPPVISH HQPQLQQQQR QLPSSAAAAA 240
TNGNLIALAG GYECSHDSSG GSSEDAAIDW SSLITAATDS ATAAVDFSFN DDIDFSPAAV 300
GPWAPQL
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swm_B | 4e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swm_C | 4e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swm_D | 4e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swp_A | 4e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swp_B | 4e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swp_C | 4e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 3swp_D | 4e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
| 4dul_A | 4e-28 | 20 | 155 | 19 | 143 | NAC domain-containing protein 19 |
| 4dul_B | 4e-28 | 20 | 155 | 19 | 143 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL928758 | 0.0 | AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AL954632 | 0.0 | AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| GenBank | KP033190 | 0.0 | KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds. |
